Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10952
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   100   2e-21
AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical ...    34   0.076
AC006749-2|AAF60533.3|  731|Caenorhabditis elegans Hypothetical ...    33   0.18 
Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z83120-6|CAB76722.1|  809|Caenorhabditis elegans Hypothetical pr...    29   3.8  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 48/80 (60%), Positives = 59/80 (73%)
 Frame = +2

Query: 17  HQEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGT 196
           + EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q SAESWGT
Sbjct: 10  YDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGT 68

Query: 197 GRAVARIPRVRGGGTHRSGR 256
           GRAVARIPRVRGGGTHRSG+
Sbjct: 69  GRAVARIPRVRGGGTHRSGQ 88



 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 29/50 (58%), Positives = 44/50 (88%)
 Frame = +3

Query: 357 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRR 506
           +  ++AA+G+PAL+QARGH+I+++ E+PLVV+DKV+   KTK+AV+FLRR
Sbjct: 123 VSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRR 172



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 21/37 (56%), Positives = 30/37 (81%)
 Frame = +2

Query: 515 WSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNK 625
           W+DI KVY S+R RAGKGK+RNR+  Q+ GP++I+ +
Sbjct: 176 WADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQ 212



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 19/23 (82%), Positives = 20/23 (86%)
 Frame = +1

Query: 256 GAFGNMCRGGRMFAPTKPWRRWH 324
           GAFGNMCRGG MFAP K +RRWH
Sbjct: 89  GAFGNMCRGGHMFAPLKVFRRWH 111


>AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical
           protein Y39C12A.5 protein.
          Length = 337

 Score = 34.3 bits (75), Expect = 0.076
 Identities = 24/56 (42%), Positives = 33/56 (58%)
 Frame = +3

Query: 414 IIEKIPELPLVVADKVQEINKTKQAVIFLRRLRHGLISLRCTSLSVFVLVRVKCAT 581
           I+EKI E    +  KV+E   + Q  IFL+ +R  LIS    SL++ VL R+ CAT
Sbjct: 64  ILEKILE----IMGKVEEYESSNQPYIFLQFVRTALISTPFHSLAITVLERL-CAT 114


>AC006749-2|AAF60533.3|  731|Caenorhabditis elegans Hypothetical
           protein Y39D8B.3 protein.
          Length = 731

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +2

Query: 479 QTGCHLPEAPKAWSDILKVYKSQRLRAGKGKMRNRRRIQRK-GPLIIFNKGSG 634
           + G +  E  K W D+++  K++  R  KGK +N+ R++RK    I   KG+G
Sbjct: 222 RAGKNKKEPQKRWQDVIQEIKNESTRI-KGKSQNKERMKRKFSKFIRTMKGTG 273


>Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical
           protein F39B2.1 protein.
          Length = 564

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 281 PRHMLPKAPDRTYEYHHHGHAEFGRQHVQY 192
           PRH L  AP     +HHH H    +QH+ Y
Sbjct: 37  PRHNL-YAPTAPPHHHHHHHQHQPQQHLHY 65


>Z83120-6|CAB76722.1|  809|Caenorhabditis elegans Hypothetical
           protein R06A4.9 protein.
          Length = 809

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 302 VGANIRPPRHMLPKAPDRTYEYHHHGHAEFGRQHV 198
           V   I+P    +  +  R    HHH H  F R+HV
Sbjct: 14  VTLTIQPSTSSMQNSQPRIMNNHHHPHNRFQREHV 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,904,366
Number of Sequences: 27780
Number of extensions: 314385
Number of successful extensions: 898
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)