Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10947X
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...    53   2e-08
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    29   0.31 
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   2.9  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   6.6  

>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 52.8 bits (121), Expect = 2e-08
 Identities = 23/39 (58%), Positives = 29/39 (74%)
 Frame = +1

Query: 280 KGPKVTHKVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
           +GPKVT  V FD++ GD+ +G + IGL GKTVPKT E F
Sbjct: 21  RGPKVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAENF 59


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = +1

Query: 133 IVNFEKINIRNEFCKNSKETN*TRFNHGY--PYNGFRNFVVHRSAKSDEIPKGPKVTHKV 306
           +++ E +N  ++F  N K+ +    N G    YN  RNF+  R   + EI         +
Sbjct: 492 VISLELLNFFSQFKCNKKDYSFVA-NLGSLKMYNDDRNFLYPRETSNKEIETTSPSIFTL 550

Query: 307 SFDMKIGDDNIGTIVIGLS 363
           SF+    DDN  T  +G++
Sbjct: 551 SFERSSSDDN-DTDTLGIN 568


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 199 FSSFPCYFYKIRFECLFFQNLRY 131
           FSSF   F+++ F C FF  L Y
Sbjct: 11  FSSFESLFFRLFFVCSFFFPLLY 33


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 13/54 (24%), Positives = 30/54 (55%)
 Frame = -2

Query: 196 SSFPCYFYKIRFECLFFQNLRYKIRNLI*KPSQFTILLIRNNHTVLSLASSVEL 35
           ++ P + Y    E L+ +    +I +L+ +P+Q  + +I + H+  +  S++EL
Sbjct: 323 NAIPEHGYLHSSELLYPEGTEQQIISLVDEPNQNALWIIEHEHSQDNNRSNIEL 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,592,870
Number of Sequences: 5004
Number of extensions: 30016
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)