Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10947X
(428 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1341 + 29458085-29458198,29458448-29458526,29458923-294589... 46 1e-05
05_01_0022 + 154399-154428,154528-154716,155469-155619,155724-15... 46 2e-05
06_03_1340 + 29455210-29455290,29455493-29455571,29455767-294558... 42 2e-04
01_02_0015 + 10191793-10191957,10192085-10192229,10192331-101924... 41 5e-04
09_06_0098 + 20850535-20850612,20851258-20851333,20851474-208515... 40 6e-04
09_06_0359 + 22508900-22509439 33 0.098
02_01_0160 + 1116160-1116678 32 0.23
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 30 0.91
03_06_0417 - 33782577-33782687,33782996-33783052,33783110-337832... 27 4.9
06_01_0798 - 5944815-5944888,5945084-5945243,5945319-5945356,594... 27 6.4
03_05_1014 - 29687343-29687410,29688054-29688191,29689246-296892... 27 8.5
>06_03_1341 +
29458085-29458198,29458448-29458526,29458923-29458970,
29459064-29459087,29459554-29459736,29459845-29459920,
29460020-29460158
Length = 220
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +1
Query: 289 KVTHKVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
+VTHKV FD++I G +V+GL GKTVPKT E F
Sbjct: 48 EVTHKVYFDVEIDGKPAGRVVMGLFGKTVPKTAENF 83
>05_01_0022 +
154399-154428,154528-154716,155469-155619,155724-155812,
156391-156445,156533-156618,156705-156857
Length = 250
Score = 45.6 bits (103), Expect = 2e-05
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Frame = +1
Query: 241 FVVHRSAKSDEIPKGPKVTHKVSFDMKIGDD---NIGTIVIGLSGKTVPKTTEXF 396
FV +A E+ K+T+KV FD+ IG+ N+G +VIGL G VP+T E F
Sbjct: 64 FVSSATADPKEVDLQSKITNKVYFDISIGNPVGKNVGRVVIGLYGDDVPQTAENF 118
>06_03_1340 +
29455210-29455290,29455493-29455571,29455767-29455814,
29455908-29455931,29456433-29456615,29456730-29456805,
29456937-29457072
Length = 208
Score = 41.9 bits (94), Expect = 2e-04
Identities = 21/36 (58%), Positives = 23/36 (63%)
Frame = +1
Query: 289 KVTHKVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
KVT KV FD+ I G IV+GL G TVPKT E F
Sbjct: 37 KVTTKVFFDITINGKPAGRIVMGLFGNTVPKTAENF 72
>01_02_0015 +
10191793-10191957,10192085-10192229,10192331-10192419,
10193009-10193063,10193607-10193692,10194006-10194065
Length = 199
Score = 40.7 bits (91), Expect = 5e-04
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +1
Query: 289 KVTHKVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
KV K FD+++G + G IVIGL G+ VPKT + F
Sbjct: 63 KVNSKCFFDVEVGGEPAGRIVIGLFGEVVPKTVDNF 98
>09_06_0098 +
20850535-20850612,20851258-20851333,20851474-20851521,
20851758-20851781,20851875-20851994,20852235-20852310,
20852385-20852547
Length = 194
Score = 40.3 bits (90), Expect = 6e-04
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +1
Query: 286 PKVTHKVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
P VT++V D++I +IG IVIGL G VPKT F
Sbjct: 34 PAVTNRVYLDVEIDGQHIGRIVIGLYGDVVPKTVANF 70
>09_06_0359 + 22508900-22509439
Length = 179
Score = 33.1 bits (72), Expect = 0.098
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 301 KVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
KV FD+ IG G +V+ L TVPKT E F
Sbjct: 7 KVFFDILIGKARAGRVVMELFADTVPKTAENF 38
>02_01_0160 + 1116160-1116678
Length = 172
Score = 31.9 bits (69), Expect = 0.23
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 301 KVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
+V FDM +G G IV+ L K VP+T E F
Sbjct: 5 RVFFDMTVGGAPAGRIVMELYAKDVPRTAENF 36
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 29.9 bits (64), Expect = 0.91
Identities = 18/41 (43%), Positives = 20/41 (48%)
Frame = +1
Query: 274 IPKGPKVTHKVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
+PK K H V FD+ IG I L VPKTTE F
Sbjct: 1 MPKAKKNPH-VFFDIAIGGRAAERITFELFADVVPKTTENF 40
>03_06_0417 -
33782577-33782687,33782996-33783052,33783110-33783205,
33783252-33783284,33783543-33783599,33783968-33784060,
33784308-33784395,33784812-33784835,33784956-33785164
Length = 255
Score = 27.5 bits (58), Expect = 4.9
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +1
Query: 277 PKGPKVTHKVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
P PK V FD+ IG G I + L VPKT E F
Sbjct: 31 PPNPK-NPVVFFDVTIGSIPAGRIKMELFADIVPKTAENF 69
>06_01_0798 -
5944815-5944888,5945084-5945243,5945319-5945356,
5945438-5945513,5946114-5946218,5947486-5947986,
5948638-5948710,5949550-5949593,5949938-5950174
Length = 435
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 313 DMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
D+ IG + G IVI L VP+T E F
Sbjct: 31 DVSIGGEIEGRIVIELYASVVPRTAENF 58
>03_05_1014 -
29687343-29687410,29688054-29688191,29689246-29689294,
29689623-29689728,29690184-29690332,29690840-29690921,
29691308-29691360,29691644-29691729,29691855-29691909,
29692179-29692579,29693564-29693660,29694191-29694322,
29694426-29694476,29694659-29694751,29694917-29694992,
29695711-29695856,29696009-29696043,29696056-29696107,
29696290-29696401,29696617-29696813,29697456-29697560,
29697667-29697819,29698317-29698424,29698608-29698752,
29699374-29699432,29701397-29701441,29701677-29701730,
29701901-29702113,29702873-29702958,29704492-29704572,
29704670-29704729,29705599-29705644,29706212-29706286,
29706376-29706512,29708306-29708366,29708726-29708743,
29709710-29709743,29709811-29709902,29709997-29710029
Length = 1260
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 301 KVSFDMKIGDDNIGTIVIGLS-GKTVPKTTEXF 396
K + DM + DDN TIV +S G+ + T+ F
Sbjct: 772 KSASDMVLADDNFATIVAAVSEGRAIYNNTKQF 804
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,302,163
Number of Sequences: 37544
Number of extensions: 153324
Number of successful extensions: 262
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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