Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10947X
         (428 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.014
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)               32   0.23 
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.54 
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.54 
SB_45588| Best HMM Match : Arg_repressor_C (HMM E-Value=7.7)           27   6.6  

>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 35.9 bits (79), Expect = 0.014
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +1

Query: 292 VTHKVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
           VT KV  D+ IG    G +++GL G T PKT   F
Sbjct: 24  VTKKVWMDVSIGGQPAGRVILGLFGDTAPKTVANF 58


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 289 KVTHKVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
           +V  +V FD+ IG+ + G IV+ L    VP T E F
Sbjct: 134 RVNPRVFFDITIGERSAGRIVMELRSDVVPMTAENF 169


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +1

Query: 286 PKVTHKVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
           PK T+   FD++IG    G IV+ L    VPKT E F
Sbjct: 2   PKTTY---FDIEIGGAPAGRIVMELRDDVVPKTAENF 35


>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +1

Query: 280 KGPKVTHKVSFDMKIGDDNIGTIVIGL 360
           K P VT KV FD+ IG +  G I IGL
Sbjct: 21  KDPIVTKKVFFDITIGGEKAGRIEIGL 47


>SB_45588| Best HMM Match : Arg_repressor_C (HMM E-Value=7.7)
          Length = 271

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 145 QNLRYKIRNLI*KPSQFTILLIRNNHT-VLSLASSVELDNG 26
           +N  Y ++NL  K S     L RNN   V  ++S VE D G
Sbjct: 95  KNFEYLVKNLRNKRSSLLHQLTRNNDVMVCQISSHVEQDKG 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,087,041
Number of Sequences: 59808
Number of extensions: 188589
Number of successful extensions: 308
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)