Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10947X
         (428 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.47 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   7.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   7.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.6 bits (51), Expect = 0.47
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +1

Query: 271 EIPKGPKVTHKVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
           E+P   K   +   ++ I  D    I + +SG  VP+  E F
Sbjct: 157 ELPNDEKSLFENGVEIGINFDKYDNIQVNVSGDNVPQPIESF 198


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 205 NEFSSFPCYFYK 170
           N FSS P Y YK
Sbjct: 313 NRFSSLPYYKYK 324


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 205 NEFSSFPCYFYK 170
           N FSS P Y YK
Sbjct: 313 NRFSSLPYYKYK 324


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 343 TIVIGLSGKTVPKTT 387
           T VI +SG TVP T+
Sbjct: 844 TSVISMSGTTVPITS 858


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,537
Number of Sequences: 438
Number of extensions: 2021
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)