Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10947X
(428 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g29960.1 68415.m03644 peptidyl-prolyl cis-trans isomerase / c... 47 6e-06
At5g58710.1 68418.m07355 peptidyl-prolyl cis-trans isomerase, pu... 46 8e-06
At3g62030.1 68416.m06967 peptidyl-prolyl cis-trans isomerase, ch... 46 1e-05
At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase, pu... 43 1e-04
At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase cyc... 42 2e-04
At4g34960.1 68417.m04955 peptidyl-prolyl cis-trans isomerase, pu... 40 5e-04
At2g16600.1 68415.m01906 peptidyl-prolyl cis-trans isomerase, cy... 33 0.11
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc... 30 0.58
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 30 0.58
At2g21130.1 68415.m02507 peptidyl-prolyl cis-trans isomerase / c... 30 0.77
At2g15790.1 68415.m01810 peptidyl-prolyl cis-trans isomerase / c... 28 2.3
At4g34870.1 68417.m04946 peptidyl-prolyl cis-trans isomerase / c... 27 5.4
At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)... 27 5.4
At4g38740.1 68417.m05487 peptidyl-prolyl cis-trans isomerase / c... 27 7.1
At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase, pu... 27 7.1
At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A) 26 9.4
>At2g29960.1 68415.m03644 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP5) / rotamase identical to cyclophilin
[Arabidopsis thaliana] gi|2443755|gb|AAB71401
Length = 201
Score = 46.8 bits (106), Expect = 6e-06
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +1
Query: 289 KVTHKVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
+VTHKV FD++I + G +VIGL GK VPKT E F
Sbjct: 29 EVTHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAENF 64
>At5g58710.1 68418.m07355 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
(ROC7) similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 204
Score = 46.4 bits (105), Expect = 8e-06
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +1
Query: 289 KVTHKVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
++THKV FD++I G IV+GL GKTVPKT E F
Sbjct: 32 EITHKVYFDVEIDGKAAGRIVMGLFGKTVPKTVENF 67
>At3g62030.1 68416.m06967 peptidyl-prolyl cis-trans isomerase,
chloroplast / cyclophilin / rotamase / cyclosporin
A-binding protein (ROC4) identical to peptidyl-prolyl
cis-trans isomerase, chloroplast precursor, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Arabidopsis thaliana] SWISS-PROT:P34791; identical to
cDNA nuclear-encoded chloroplast stromal cyclophilin
(ROC4) GI:405130
Length = 260
Score = 46.0 bits (104), Expect = 1e-05
Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +1
Query: 256 SAKSDE-IPKGPKVTHKVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
+A+ +E I KVT+KV FD++IG + G IV+GL G+ VPKT E F
Sbjct: 80 AAEEEEVIEPQAKVTNKVYFDVEIGGEVAGRIVMGLFGEVVPKTVENF 127
>At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 228
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/35 (57%), Positives = 23/35 (65%)
Frame = +1
Query: 292 VTHKVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
VTHKV FD++I G I+IGL G VPKT E F
Sbjct: 57 VTHKVYFDIQINGSPAGRILIGLFGNIVPKTAENF 91
>At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 259
Score = 41.5 bits (93), Expect = 2e-04
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +1
Query: 217 YPYNGFRNFVVHRSAKSDEIPKGPKVTHKVSFDMKIGDDN---IGTIVIGLSGKTVPKTT 387
Y R F V +A+ P+ K+THKV FD+ +G+ G IVIGL G VP+T
Sbjct: 64 YTKRNHRCFSVQSNAEVVTEPQS-KITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTV 122
Query: 388 EXF 396
E F
Sbjct: 123 ENF 125
>At4g34960.1 68417.m04955 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 224
Score = 40.3 bits (90), Expect = 5e-04
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +1
Query: 232 FRNFVVHRSAKSDE--IPKGPKVTHKVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
F F + + K +E + + ++T++V D+ I +G IVIGL G VPKT E F
Sbjct: 23 FLVFALFNTGKDEEKQVIEDHEITNRVFLDVDIDGQRLGRIVIGLYGTVVPKTVENF 79
>At2g16600.1 68415.m01906 peptidyl-prolyl cis-trans isomerase,
cytosolic / cyclophilin / rotamase (ROC3) identical to
cytosolic cyclophilin [Arabidopsis thaliana] GI:1305455
Length = 173
Score = 32.7 bits (71), Expect = 0.11
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 301 KVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
KV FDM +G + G IV+ L T P+T E F
Sbjct: 6 KVYFDMTVGGKSAGRIVMELYADTTPETAENF 37
>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 387
Score = 30.3 bits (65), Expect = 0.58
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +1
Query: 289 KVTHKVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
K V D+ IG D + IVI L VPKT E F
Sbjct: 4 KKNPNVFLDVSIGGDPVQRIVIELFADVVPKTAENF 39
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 30.3 bits (65), Expect = 0.58
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +1
Query: 289 KVTHKVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
K V D+ IG D + IVI L VPKT E F
Sbjct: 4 KKNPNVFLDVSIGGDPVQRIVIELFADVVPKTAENF 39
>At2g21130.1 68415.m02507 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP2) / rotamase identical to cyclophilin
[Arabidopsis thaliana] gi|2443757|gb|AAB71402; similar
to peptidyl-prolyl cis-trans isomerase, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Arabidopsis thaliana] SWISS-PROT:P34790
Length = 174
Score = 29.9 bits (64), Expect = 0.77
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = +1
Query: 301 KVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
KV FDM IG G IV+ L PKT E F
Sbjct: 6 KVFFDMTIGGAPAGKIVMELYTDKTPKTAENF 37
>At2g15790.1 68415.m01810 peptidyl-prolyl cis-trans isomerase /
cyclophilin-40 (CYP40) / rotamase identical to
cyclophilin-40 [Arabidopsis thaliana] GI:13442983;
supporting cDNA gi|13442982|gb|AY026065.1|
Length = 361
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 301 KVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
K D+ IG + G IVI L VPKT E F
Sbjct: 5 KCFMDISIGGELEGRIVIELYDDVVPKTAENF 36
>At4g34870.1 68417.m04946 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP1) / rotamase identical to cyclophilin
(CYP1) gi|992643|gb|AAA75512; similar to peptidyl-prolyl
cis-trans isomerase, PPIase (cyclophilin, cyclosporin
A-binding protein) [Catharanthus roseus]
SWISS-PROT:Q39613
Length = 172
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 301 KVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
+V FDM + IG I + L T P T E F
Sbjct: 5 RVFFDMSLSGTPIGRIEMELFADTTPNTAENF 36
>At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)
identical to SP|O24617 DNA mismatch repair protein MSH2
(AtMsh2) {Arabidopsis thaliana}
Length = 937
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -3
Query: 243 KIPKAIVRVPMIKTSLVRFLAIFTKFVSNVYFFKI 139
K+ ++ +R+P IKT++ ++ F +S Y K+
Sbjct: 399 KLYQSTIRLPFIKTAMQQYTGEFASLISERYLKKL 433
>At4g38740.1 68417.m05487 peptidyl-prolyl cis-trans isomerase /
cyclophilin / rotamase / cyclosporin A-binding protein
(ROC1) identical to SP|P34790 Peptidyl-prolyl cis-trans
isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin)
(Cyclosporin A-binding protein) {Arabidopsis thaliana}
Length = 172
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 301 KVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
KV FDM I G IV+ L P+T E F
Sbjct: 5 KVYFDMTIDGQPAGRIVMELYTDKTPRTAENF 36
>At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to peptidyl-prolyl cis-trans isomerase PPIase
(cyclophilin, cyclosporin A-binding protein) [Tomato]
SWISS-PROT:P21568
Length = 232
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 301 KVSFDMKIGDDNIGTIVIGLSGKTVPKTTEXF 396
KV FD+ + G IVI L P+T E F
Sbjct: 5 KVFFDLTVDGKPAGRIVIELFADLTPRTAENF 36
>At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)
Length = 143
Score = 26.2 bits (55), Expect = 9.4
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 106 VFKSNFLFYIVNFEKINIRNEFCKNSKETN*TRFNHGYPYNGFRN 240
+ K+N F + F + N + +F SKETN H Y ++G N
Sbjct: 12 IVKNNNCFLVKQFGRGNSKVQF---SKETNNLTNVHSYKHSGLAN 53
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,022,568
Number of Sequences: 28952
Number of extensions: 144101
Number of successful extensions: 311
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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