Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10944X
         (374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   138   3e-34
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   137   5e-34
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    28   0.42 
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.2  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   2.9  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    25   2.9  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    25   5.1  
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po...    24   6.8  
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    24   9.0  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    24   9.0  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  138 bits (333), Expect = 3e-34
 Identities = 63/84 (75%), Positives = 71/84 (84%)
 Frame = +2

Query: 2   RLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVI 181
           R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D  +A  I
Sbjct: 90  RAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATAI 149

Query: 182 EALRRAKFKFPGRQKIYVSKKWGF 253
           EALRR ++KFPG+Q+I VSKKWGF
Sbjct: 150 EALRRCQYKFPGQQRIIVSKKWGF 173



 Score = 40.3 bits (90), Expect = 1e-04
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +1

Query: 196 CQVQVPRTSKDLRIKEVGFQKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 351
           CQ + P   + +  K+ GF +Y RDE+ + R  G +  DGC  ++  + G L
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  137 bits (332), Expect = 5e-34
 Identities = 63/84 (75%), Positives = 71/84 (84%)
 Frame = +2

Query: 2   RLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVI 181
           R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D  +A  I
Sbjct: 90  RAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAI 149

Query: 182 EALRRAKFKFPGRQKIYVSKKWGF 253
           EALRR ++KFPG+Q+I VSKKWGF
Sbjct: 150 EALRRCQYKFPGQQRIIVSKKWGF 173



 Score = 40.3 bits (90), Expect = 1e-04
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +1

Query: 196 CQVQVPRTSKDLRIKEVGFQKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 351
           CQ + P   + +  K+ GF +Y RDE+ + R  G +  DGC  ++  + G L
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 28.3 bits (60), Expect = 0.42
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
 Frame = +2

Query: 5   LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 172
           L P    R+     C        G     GK +G      AR+ IG+ +  +      K 
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158

Query: 173 QVIEALRRAKFKFPGRQKIYVSK 241
               AL++A F  PG+ +I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 109  STLRLAKRTTHPSLEPISSS 50
            +T +LAKR T PSL P  S+
Sbjct: 957  TTTKLAKRITQPSLSPARST 976


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 206 KFPGRQKIYVSKKWGFKSMNVMSLRSCVKRAASL 307
           + PGR    V+K W FKS +V  LRS + +  ++
Sbjct: 768 EMPGRMGGVVAKDWKFKSRSV--LRSLIGKGKNI 799


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 177 SSRLCAVPSSSSPDVKRSTYQRSGVS 254
           SS +   P+S SPD+K   YQ  G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 334 PEHGPLDAWRKVH 372
           PE  P+D WRK H
Sbjct: 606 PEDKPVDTWRKYH 618


>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 226 DLRIKEVGFQKYERDEFEKLREE 294
           D+ I+  GF K +  E EK R+E
Sbjct: 291 DIMIEASGFNKKQSKELEKYRQE 313


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 186 ASMTCAFHLSLERTDMMGC 130
           A+ TC +   L  TD MGC
Sbjct: 294 AAATCKYVFDLHPTDRMGC 312


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 69  RLGCVVRLASLRVL*HVFALDSPSCPCALV 158
           R+GC +  + L ++ +V  L    CP AL+
Sbjct: 252 RIGCEIEASVLFIMGNVLFLCEMECPGALI 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,608,697
Number of Sequences: 5004
Number of extensions: 30293
Number of successful extensions: 99
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)