Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10944X
(374 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 137 3e-33
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 136 4e-33
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 134 2e-32
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 0.39
07_03_1509 - 27246721-27247350 29 0.90
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 2.1
12_02_0103 - 13630229-13630335,13631608-13631703,13631796-13632036 27 3.6
09_06_0319 - 22293869-22293906,22294539-22295808 27 3.6
08_02_0567 + 18769742-18769790,18769928-18771351 27 3.6
06_02_0084 - 11547820-11548773 27 3.6
05_01_0378 + 2970528-2971008,2971961-2972036,2972108-2972253,297... 27 4.8
01_06_0212 + 27575406-27575604,27575723-27576241,27576371-27576387 27 4.8
02_01_0759 - 5628913-5630870,5631023-5631047 27 6.3
07_03_0604 + 19903654-19904598 26 8.4
06_03_1213 - 28463774-28464286 26 8.4
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975... 26 8.4
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226... 26 8.4
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 137 bits (331), Expect = 3e-33
Identities = 64/84 (76%), Positives = 69/84 (82%)
Frame = +2
Query: 2 RLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVI 181
R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR
Sbjct: 86 RVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHAS 145
Query: 182 EALRRAKFKFPGRQKIYVSKKWGF 253
EALRRAKFKFPGRQKI S+KWGF
Sbjct: 146 EALRRAKFKFPGRQKIIESRKWGF 169
Score = 35.1 bits (77), Expect = 0.018
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 211 PRTSKDLRIKEVGFQKYERDEFEKLREEGRLANDG 315
P K + ++ GF K+ RDE+ +L+ EGR+ DG
Sbjct: 156 PGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDG 190
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 136 bits (330), Expect = 4e-33
Identities = 64/84 (76%), Positives = 70/84 (83%)
Frame = +2
Query: 2 RLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVI 181
R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR +
Sbjct: 90 RVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAE 149
Query: 182 EALRRAKFKFPGRQKIYVSKKWGF 253
EALRRAKFKFPGRQKI S+KWGF
Sbjct: 150 EALRRAKFKFPGRQKIIHSRKWGF 173
Score = 39.9 bits (89), Expect = 6e-04
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +1
Query: 211 PRTSKDLRIKEVGFQKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 351
P K + ++ GF K+ R+E+ KL+ EGR+ +DG Q HG L
Sbjct: 160 PGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 134 bits (325), Expect = 2e-32
Identities = 62/82 (75%), Positives = 68/82 (82%)
Frame = +2
Query: 8 HPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 187
HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++SVR D A EA
Sbjct: 399 HPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLSVRCRDANAAHAQEA 458
Query: 188 LRRAKFKFPGRQKIYVSKKWGF 253
LRRAKFKFPGRQ++ S KWGF
Sbjct: 459 LRRAKFKFPGRQRVIFSAKWGF 480
Score = 35.9 bits (79), Expect = 0.010
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 247 GFQKYERDEFEKLREEGRLANDGCIVQYRPEHG 345
GF +++RDE+ KL+ EGR+ DG + HG
Sbjct: 479 GFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 0.39
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -3
Query: 138 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 46
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>07_03_1509 - 27246721-27247350
Length = 209
Score = 29.5 bits (63), Expect = 0.90
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +3
Query: 126 LDSPSCPCALVTGGRHRSSRL---CAVP--SSSSPDVKRSTYQRSGVS 254
L P PC RH RL +P +SSSP+++R+T R+G S
Sbjct: 132 LQPPLSPCLSAGRRRHHLPRLHDAALIPGITSSSPELRRNTVARAGFS 179
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 2.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 92 GKPQGTVARVRIGQPIMSVRSSD 160
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>12_02_0103 - 13630229-13630335,13631608-13631703,13631796-13632036
Length = 147
Score = 27.5 bits (58), Expect = 3.6
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = +1
Query: 178 HRGSAPCQVQV-PRTSKD--LRIKEVGFQKYERDEFEK---LREEGRLANDGCI 321
HR VQV P +K L +VGF + DE ++ +R +GR N+GC+
Sbjct: 94 HRAHIRLGVQVRPEQAKSPGLDCNDVGFGEEVHDESDEEKIVRNDGRKRNEGCM 147
>09_06_0319 - 22293869-22293906,22294539-22295808
Length = 435
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 92 GKPQGTVARVRIGQPIMSVRSSD 160
G PQ T+ R+ +G P +S+ S D
Sbjct: 343 GTPQPTLERLHVGHPTLSLHSDD 365
>08_02_0567 + 18769742-18769790,18769928-18771351
Length = 490
Score = 27.5 bits (58), Expect = 3.6
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +2
Query: 77 MRGAFGKPQG--TVARVRIGQPIMSVRSSDRW-KAQVIEALRRAKFKFPGRQKI 229
MR G+ G A +RI + I + ++++ +AQV+EA RR F+ PGR ++
Sbjct: 24 MRTNGGEQMGGSEAAHIRIDEIIRRLDAAEKEAQAQVVEA-RREIFRVPGRHRL 76
>06_02_0084 - 11547820-11548773
Length = 317
Score = 27.5 bits (58), Expect = 3.6
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +2
Query: 41 LSCAGADRLQTGMRGAFGK--PQGTVARVRIGQPIMSVRSSDRWK 169
L G DR Q GMRGA P RVR +P R +W+
Sbjct: 133 LGAGGGDRGQLGMRGAADGWWPDWRERRVRWRRPAWRERRGRQWR 177
>05_01_0378 +
2970528-2971008,2971961-2972036,2972108-2972253,
2972300-2972817
Length = 406
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 37 NVIMRWS**APDWDAWCVWQASGYCSTCSHWT 132
NV+ RW P AWC + S + CS W+
Sbjct: 342 NVLGRWGH-GPVPGAWCSGRKSWFSDPCSQWS 372
>01_06_0212 + 27575406-27575604,27575723-27576241,27576371-27576387
Length = 244
Score = 27.1 bits (57), Expect = 4.8
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -2
Query: 223 LTSGELELGTAQSLDDLCLPPVTRAHGHDGLSNANTCYSTLRLAKRTTHP 74
L+SGEL +G + D+ LPPV G G S+A S + +R P
Sbjct: 134 LSSGELLIGASSPYDEPPLPPVHSRRG-AGRSSAVPRLSAPDIGRRYYEP 182
>02_01_0759 - 5628913-5630870,5631023-5631047
Length = 660
Score = 26.6 bits (56), Expect = 6.3
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -3
Query: 159 SLERTDMMGCPMRT---RATVP*GLPNAPRIPVWSLSAPAHDNI 37
SLER D+ CP+ T A V G PN + V S S +D +
Sbjct: 233 SLERLDITRCPLITDKGLAAVAHGCPNLLSLTVESCSGVGNDGL 276
>07_03_0604 + 19903654-19904598
Length = 314
Score = 26.2 bits (55), Expect = 8.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 337 PGGTAQCSRH*RGGPLHAASQTHH 266
PGG + R G P+H A + HH
Sbjct: 80 PGGRRRRPRRVEGAPVHRARRLHH 103
>06_03_1213 - 28463774-28464286
Length = 170
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 232 VDLLTSGELELGTAQSLDDLCLPPVTRAHGHDGLSNAN 119
+D++ +G+L LG +L +P + A G DG+ A+
Sbjct: 89 LDVMNAGQLGLGALGALLQSAVPALESAAGPDGVLGAD 126
>03_02_0602 +
9759055-9759223,9759305-9759455,9759548-9759593,
9759974-9760033,9760519-9760555,9761268-9761347,
9761413-9761516,9761613-9761673,9762962-9763019,
9763866-9763918,9764357-9765320,9766131-9766185,
9767223-9768786
Length = 1133
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 366 LPPSVERSMFRAVLHNAAVISEAALFTQLLKLITFILL 253
L SV R+VLH+ VIS A L +L+ +L+
Sbjct: 282 LRKSVSLPCIRSVLHSTCVISAMAAAAALNRLLPLVLI 319
>02_05_0902 + 32620668-32621209,32621847-32622258,32622471-32622675,
32622712-32622806,32622945-32623557,32623652-32623820,
32624392-32624749,32625226-32625336,32626207-32626561,
32627262-32627484,32627837-32628058,32628628-32628781
Length = 1152
Score = 26.2 bits (55), Expect = 8.4
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 20 VIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSS 157
V R +LSC G G+ +PQ AR + I S+RSS
Sbjct: 865 VDRAIHVLSCLGDKAKYASFDGSISRPQVLKARQGFKEQIRSLRSS 910
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,743,101
Number of Sequences: 37544
Number of extensions: 244260
Number of successful extensions: 697
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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