Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10944X
(374 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041) 84 4e-17
SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053) 34 0.043
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.40
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05) 28 2.8
SB_18608| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_36413| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31) 27 6.5
SB_42096| Best HMM Match : ShTK (HMM E-Value=3.5e-05) 26 8.7
>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
Length = 50
Score = 83.8 bits (198), Expect = 4e-17
Identities = 40/50 (80%), Positives = 43/50 (86%)
Frame = +2
Query: 77 MRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQK 226
MRGAFGKPQGTVARV IGQ I+S+R+ D KA IEALRRAKFKFPGRQK
Sbjct: 1 MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50
>SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)
Length = 659
Score = 33.9 bits (74), Expect = 0.043
Identities = 26/81 (32%), Positives = 36/81 (44%)
Frame = -2
Query: 355 RREVHVPGGTAQCSRH*RGGPLHAASQTHHVHTFETPLL*YVDLLTSGELELGTAQSLDD 176
+R++HV G + + H GG L Q H + P + L+ LE TA +
Sbjct: 10 KRQLHVRGLSRKWVMH-PGGRLPVKRQLHLISAPVNPSTRFTPTLSRMSLETVTAAPIPT 68
Query: 175 LCLPPVTRAHGHDGLSNANTC 113
V A+ DGLSNAN C
Sbjct: 69 QTSRSVALAY--DGLSNANVC 87
>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1278
Score = 30.7 bits (66), Expect = 0.40
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -2
Query: 235 YVDLLTSGELELGTAQSLDDLCLPPVTRAHGHDGLSNANT--CYSTLRLAKRTT 80
Y + ++G + T D+C+P + HGH +ANT CY + A +T
Sbjct: 68 YAESCSAGHYVVRTGNPFTDICIP--CQCHGHSDQCDANTGICYVRIYTADLST 119
>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2077
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = +2
Query: 83 GAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKW 247
G G+P G+V + +++++ +W + E++ A + FP S+ W
Sbjct: 1109 GVDGRPSGSVEILGSRDSFVAIQNGRQWMLDIEESISIAFYVFPNNSLGNTSRNW 1163
>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
Length = 726
Score = 27.9 bits (59), Expect = 2.8
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 85 CVWQASGYCSTCSHWTAHHV 144
C W +G C C HW HV
Sbjct: 79 CYWIRTGCCHLCWHWRPLHV 98
>SB_18608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 128 GQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWG 250
G + +VR +DR K ++++AL +P + V+ K+G
Sbjct: 516 GGGVNTVRLTDRTKTEMLKALWDVSVSYPKGHAVLVAYKYG 556
>SB_36413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 26.6 bits (56), Expect = 6.5
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +2
Query: 83 GAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFKSM 262
G G+ + V G P S + RW+ + AL + K + +V K+WG S
Sbjct: 49 GEAGEVENGEYSVIYGSP-ESWLKNQRWRELLSSALFKEKLCCIAVDEAHVIKQWGTSST 107
Query: 263 NVM-SLRSCVKRAASLMTAA 319
N M + R+ L T A
Sbjct: 108 NKMVAFRTIYSELHELRTLA 127
>SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1005
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -2
Query: 196 TAQSLDDLCLPPVTRAHGHDGLSN 125
TA ++D C+P ++RA G DGLS+
Sbjct: 104 TAFAVD--CIPRISRAQGFDGLSS 125
>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
Length = 883
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 114 HVFALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQ 239
HV A P P + + + +S A+ +SS+P + S Q
Sbjct: 261 HVIANQHPPAPVSQLQSNSNNASAARAITTSSNPSISTSVLQ 302
>SB_42096| Best HMM Match : ShTK (HMM E-Value=3.5e-05)
Length = 64
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 178 HRGSAPCQVQVPRTSKDLRIKEVGFQKYERDEFEK 282
HRG + C + P T + + Q Y RD EK
Sbjct: 19 HRGCSRCSDKYPHTCRQFSYSCITGQFYRRDFMEK 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,844,259
Number of Sequences: 59808
Number of extensions: 262075
Number of successful extensions: 775
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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