Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10944X
         (374 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   125   9e-30
Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical pr...    28   1.9  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   1.9  
U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell l...    27   3.3  
AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical ...    27   3.3  
Z81108-6|CAI79211.1|  186|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z81108-5|CAB03235.1|  288|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AF034258-1|AAC82328.1|  288|Caenorhabditis elegans exonuclease I...    27   4.4  
Z68227-9|CAA92514.1|   64|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AL021488-11|CAN86609.1| 1245|Caenorhabditis elegans Hypothetical...    27   5.8  
AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical...    27   5.8  
AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical ...    27   5.8  
AL021483-11|CAN86637.1| 1245|Caenorhabditis elegans Hypothetical...    27   5.8  
AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical...    27   5.8  
AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical ...    27   5.8  
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr...    26   7.6  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  125 bits (302), Expect = 9e-30
 Identities = 60/84 (71%), Positives = 65/84 (77%)
 Frame = +2

Query: 2   RLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVI 181
           R HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG VARV IG  + S+R  +      I
Sbjct: 90  RKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMRIKEGNVKHAI 149

Query: 182 EALRRAKFKFPGRQKIYVSKKWGF 253
           EA RRAKFKFPGRQ I  S+KWGF
Sbjct: 150 EAFRRAKFKFPGRQIIVSSRKWGF 173



 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 20/38 (52%), Positives = 29/38 (76%)
 Frame = +1

Query: 247 GFQKYERDEFEKLREEGRLANDGCIVQYRPEHGPLDAW 360
           GF K++R+++E++R EGRL +DG  VQ + EHGPL  W
Sbjct: 172 GFTKWDREDYERMRAEGRLRSDGVGVQLQREHGPLTKW 209


>Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical
           protein F07A11.6d protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -2

Query: 169 LPPVTRAHGHDGLSNANTCYSTLRLAKRTTHPSLEPISSSA 47
           +P VT A   + LSN  T  ST  LA   T  +L P+S  A
Sbjct: 46  VPVVTTASTPNPLSNLETLLSTASLANLATGGALNPLSMLA 86


>Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical
           protein F01G10.1 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 80  RGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIE--ALRRAKFKFPGRQK 226
           R   GKP   +A+   G+ I  + + D W  + +    +   K +F G QK
Sbjct: 228 RSTKGKPTAIIAKTLKGKGIEGIENEDNWHGKPVPEGTVNAIKARFHGSQK 278


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 99  GLPNAPRIPVWSLSAPA 49
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell
           lineage protein 32 protein.
          Length = 142

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 120 FALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKR 227
           F+LDSP+ P +L  GG     + C    + SP + R
Sbjct: 36  FSLDSPNYPDSLSNGGGKDDKKKCRRYKTPSPQLLR 71


>AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical
           protein C29F9.4 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 250 FQKYERDEFEKLREEGRLANDGCIVQYR 333
           F K +RDEFE++R +  LA +  I  Y+
Sbjct: 136 FFKSQRDEFERIRYDPELAEEHFIEAYK 163


>Z81108-6|CAI79211.1|  186|Caenorhabditis elegans Hypothetical
           protein R09B3.1b protein.
          Length = 186

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 140 MSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFKSMNVMSLRSCVKRA 298
           MS R ++   A  + ++   K K P  +     K W F   NV  LR+CVK++
Sbjct: 1   MSKRKAEEAPAPKLASIFTKKVK-PAEEDNN-QKSWKFVCWNVAGLRACVKKS 51


>Z81108-5|CAB03235.1|  288|Caenorhabditis elegans Hypothetical
           protein R09B3.1a protein.
          Length = 288

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 140 MSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFKSMNVMSLRSCVKRA 298
           MS R ++   A  + ++   K K P  +     K W F   NV  LR+CVK++
Sbjct: 1   MSKRKAEEAPAPKLASIFTKKVK-PAEEDNN-QKSWKFVCWNVAGLRACVKKS 51


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 238 KEVGFQKYERDEFEKLREEGRLANDGCIVQYRPEH 342
           +EVGF + + DE  +  + G+   DG   +Y P H
Sbjct: 429 EEVGFDRKDDDETYEPYQGGQAQPDGSPSEYSPNH 463


>AF034258-1|AAC82328.1|  288|Caenorhabditis elegans exonuclease III
           homolog protein.
          Length = 288

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 140 MSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFKSMNVMSLRSCVKRA 298
           MS R ++   A  + ++   K K P  +     K W F   NV  LR+CVK++
Sbjct: 1   MSKRKAEEAPAPKLASIFTKKVK-PAEEDNN-QKSWKFVCWNVAGLRACVKKS 51


>Z68227-9|CAA92514.1|   64|Caenorhabditis elegans Hypothetical
           protein F49C12.11 protein.
          Length = 64

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = +1

Query: 214 RTSKDLRIKEVGFQKYERDEFEKLRE 291
           +T KDL  ++V F+K +++E +K++E
Sbjct: 17  KTEKDLSEEDVEFKKKQQEEAKKIKE 42


>AL021488-11|CAN86609.1| 1245|Caenorhabditis elegans Hypothetical
            protein Y45F10A.6c protein.
          Length = 1245

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 162  LSLERTDMMGCPMRTRATVP*GLPNAPRIP 73
            L++E TD++G P RT+A +     N+  IP
Sbjct: 962  LAIEATDLLGTPKRTQAQLQERRSNSVDIP 991


>AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical
            protein Y45F10A.6a protein.
          Length = 1247

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 162  LSLERTDMMGCPMRTRATVP*GLPNAPRIP 73
            L++E TD++G P RT+A +     N+  IP
Sbjct: 962  LAIEATDLLGTPKRTQAQLQERRSNSVDIP 991


>AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical
            protein Y45F10A.6b protein.
          Length = 1245

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 162  LSLERTDMMGCPMRTRATVP*GLPNAPRIP 73
            L++E TD++G P RT+A +     N+  IP
Sbjct: 962  LAIEATDLLGTPKRTQAQLQERRSNSVDIP 991


>AL021483-11|CAN86637.1| 1245|Caenorhabditis elegans Hypothetical
            protein Y45F10A.6c protein.
          Length = 1245

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 162  LSLERTDMMGCPMRTRATVP*GLPNAPRIP 73
            L++E TD++G P RT+A +     N+  IP
Sbjct: 962  LAIEATDLLGTPKRTQAQLQERRSNSVDIP 991


>AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical
            protein Y45F10A.6a protein.
          Length = 1247

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 162  LSLERTDMMGCPMRTRATVP*GLPNAPRIP 73
            L++E TD++G P RT+A +     N+  IP
Sbjct: 962  LAIEATDLLGTPKRTQAQLQERRSNSVDIP 991


>AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical
            protein Y45F10A.6b protein.
          Length = 1245

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 162  LSLERTDMMGCPMRTRATVP*GLPNAPRIP 73
            L++E TD++G P RT+A +     N+  IP
Sbjct: 962  LAIEATDLLGTPKRTQAQLQERRSNSVDIP 991


>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical protein
            K10D2.1a protein.
          Length = 1223

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 292  LHAASQTHHVHTFETPLL*YVDLLTSGELELGTAQSLDDL 173
            LH A Q  +   ++T L+ YV+ L  G  E      L+DL
Sbjct: 1134 LHCAEQLGNPQDYQTMLMLYVETLCEGGSEKKLKNILNDL 1173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,254,103
Number of Sequences: 27780
Number of extensions: 187232
Number of successful extensions: 496
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)