Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10944X
(374 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 138 8e-34
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 137 2e-33
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 137 2e-33
At5g56970.1 68418.m07111 FAD-binding domain-containing protein /... 28 2.3
At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein... 27 3.1
At3g59110.1 68416.m06590 protein kinase family protein contains ... 27 3.1
At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger) fa... 27 3.1
At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger) fa... 27 3.1
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR... 27 4.1
At2g30040.1 68415.m03653 protein kinase family protein contains ... 27 4.1
At2g42960.1 68415.m05328 protein kinase family protein contains ... 27 5.4
At5g47870.1 68418.m05914 expressed protein 26 7.1
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea... 26 7.1
At1g07490.1 68414.m00802 expressed protein 26 7.1
At2g16720.1 68415.m01918 myb family transcription factor contain... 26 9.4
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 138 bits (335), Expect = 8e-34
Identities = 65/88 (73%), Positives = 70/88 (79%)
Frame = +2
Query: 2 RLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVI 181
R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++SVR D
Sbjct: 90 RVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDNHGVHAQ 149
Query: 182 EALRRAKFKFPGRQKIYVSKKWGFKSMN 265
EALRRAKFKFPGRQKI VS+KWGF N
Sbjct: 150 EALRRAKFKFPGRQKIIVSRKWGFTKFN 177
Score = 36.3 bits (80), Expect = 0.007
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 211 PRTSKDLRIKEVGFQKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 351
P K + ++ GF K+ R E+ KLR R+ DG ++ HGPL
Sbjct: 160 PGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPL 206
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 137 bits (332), Expect = 2e-33
Identities = 65/88 (73%), Positives = 70/88 (79%)
Frame = +2
Query: 2 RLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVI 181
R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++SVR D
Sbjct: 90 RVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQ 149
Query: 182 EALRRAKFKFPGRQKIYVSKKWGFKSMN 265
EALRRAKFKFPGRQKI VS+KWGF N
Sbjct: 150 EALRRAKFKFPGRQKIIVSRKWGFTKFN 177
Score = 37.5 bits (83), Expect = 0.003
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 211 PRTSKDLRIKEVGFQKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 351
P K + ++ GF K+ R ++ KLR+E R+ DG ++ HGPL
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPL 206
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 137 bits (332), Expect = 2e-33
Identities = 65/88 (73%), Positives = 70/88 (79%)
Frame = +2
Query: 2 RLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVI 181
R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++SVR D
Sbjct: 90 RVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQ 149
Query: 182 EALRRAKFKFPGRQKIYVSKKWGFKSMN 265
EALRRAKFKFPGRQKI VS+KWGF N
Sbjct: 150 EALRRAKFKFPGRQKIIVSRKWGFTKFN 177
Score = 38.3 bits (85), Expect = 0.002
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +1
Query: 211 PRTSKDLRIKEVGFQKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 351
P K + ++ GF K+ R +F KLR+E R+ DG ++ HGPL
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPL 206
>At5g56970.1 68418.m07111 FAD-binding domain-containing protein /
cytokinin oxidase family protein similar to cytokinin
oxidase from Zea mays [gi:3882018] [gi:3341978]
Length = 523
Score = 27.9 bits (59), Expect = 2.3
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 211 PRTSKDLRIKEVGFQKYERDEFEKL-REEGRLANDGCIVQYRPEHGPLDAWRKVH 372
P+ +K LR + F ++ RD+ + + +G +G I+ +HGP D WR +
Sbjct: 244 PKRAKWLRFLYIDFSEFTRDQERVISKTDGVDFLEGSIMV---DHGPPDNWRSTY 295
>At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein
low similarity to SP|P25583 Karyogamy protein KAR4
{Saccharomyces cerevisiae},
(N6-adenosine)-methyltransferase [Mus musculus]
GI:10179948; contains Pfam profile PF05063: MT-A70
(S-adenosylmethionine-binding subunit of human mRNA:m6A
methyl-transferase (MTase))
Length = 775
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 259 YERDEFEKLREEGRLANDGCIVQYRPEHGPLDAWRKVH 372
YE++++ + E R +DG + R + G D W++ H
Sbjct: 190 YEKEKYSRKDERSRGRDDGWSDRDRDQEGLKDNWKRRH 227
>At3g59110.1 68416.m06590 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 512
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 205 QVPRTSKDLRIKE-VGFQKYERDEFEKLREEGRLANDGCIVQY 330
Q+PR +KD+R+ + VGFQ + + ++ N G ++ Y
Sbjct: 66 QIPRVAKDIRVDDRVGFQNHNENLSITNADKSSDRNSGKMMSY 108
>At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 27.5 bits (58), Expect = 3.1
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +3
Query: 123 ALDSPSC----PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGV 251
+++SPS P L+ G SS +PSSS+ RS ++RSG+
Sbjct: 482 SIESPSASHGGPLPLLPAGPSVSSNEVTMPSSSNSRSHRSRHRRSGL 528
>At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 27.5 bits (58), Expect = 3.1
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +3
Query: 123 ALDSPSC----PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGV 251
+++SPS P L+ G SS +PSSS+ RS ++RSG+
Sbjct: 482 SIESPSASHGGPLPLLPAGPSVSSNEVTMPSSSNSRSHRSRHRRSGL 528
>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1210
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 17 HVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQ 133
H+ RIN +L +D G+ G G + T+ARV Q
Sbjct: 240 HITRINSLLCLESSDVRMIGILGPPGIGKTTIARVLYDQ 278
>At2g30040.1 68415.m03653 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 463
Score = 27.1 bits (57), Expect = 4.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 125 CEHVLQYPEACQTHHAS 75
C+ +LQ+P CQ HH S
Sbjct: 261 CDQLLQHPFLCQDHHDS 277
>At2g42960.1 68415.m05328 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 494
Score = 26.6 bits (56), Expect = 5.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 205 QVPRTSKDLRIKEVGFQ 255
Q+P SKD+R+ GFQ
Sbjct: 65 QIPHVSKDIRVDRAGFQ 81
>At5g47870.1 68418.m05914 expressed protein
Length = 199
Score = 26.2 bits (55), Expect = 7.1
Identities = 19/71 (26%), Positives = 28/71 (39%)
Frame = +2
Query: 2 RLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVI 181
+L PF + +N+ + C+G G+ G + V PI SS +I
Sbjct: 25 KLSPFRTVAVNRGVRCSGG-----GVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRPLI 79
Query: 182 EALRRAKFKFP 214
E LR K P
Sbjct: 80 EILRDLNKKIP 90
>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
repeat (6 copies,1 weak)
Length = 757
Score = 26.2 bits (55), Expect = 7.1
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +1
Query: 172 TGHRGSAPCQVQVPRTSKDLRIKEVGFQKYERDEFEKLREEGRLANDGCIV 324
TGH + C VP TS +L + G E F R GR +D I+
Sbjct: 90 TGHTANIFCTKFVPETSDELVVSGAG--DAEVRLFNTSRLSGRAEDDNAII 138
>At1g07490.1 68414.m00802 expressed protein
Length = 107
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 177 SSRLCAVPSSSSPDVKRSTYQR 242
SS C+VPSSSS + RS+ ++
Sbjct: 48 SSTKCSVPSSSSSSISRSSSKK 69
>At2g16720.1 68415.m01918 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 269
Score = 25.8 bits (54), Expect = 9.4
Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +1
Query: 121 SHWTAHHVRAL**Q-VEGTGHRGSAPCQVQVPRTSKDLRIKEVGF-QKYERDEFEKLREE 294
++W H R L + ++ HRG ++ + +KD +K+V F K+E + +++
Sbjct: 106 NYWNTHIKRKLLSKGIDPATHRGINEAKISDLKKTKDQIVKDVSFVTKFEETDKSGDQKQ 165
Query: 295 GRLANDGCI 321
+ +G +
Sbjct: 166 NKYIRNGLV 174
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,827,016
Number of Sequences: 28952
Number of extensions: 174714
Number of successful extensions: 514
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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