Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10940
         (635 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    23   1.6  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    22   3.7  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.9  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.9  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.9  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   6.5  

>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 465 QPEFTPQKYFSIDKVSA 515
           +P FT  ++F ID+++A
Sbjct: 293 RPSFTAARFFEIDRINA 309


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 444 DAVQTRAQPEFTPQKYFSIDK 506
           D VQ   +PEF   ++FSID+
Sbjct: 209 DVVQHN-RPEFKAARFFSIDR 228


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 5   LETDLTSDMLLSGSWKTLEFKPYN 76
           ++ D  + +L + +W  LE+  YN
Sbjct: 41  IDVDEKNQILTTNAWLNLEWNDYN 64


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 5   LETDLTSDMLLSGSWKTLEFKPYN 76
           ++ D  + +L + +W  LE+  YN
Sbjct: 41  IDVDEKNQILTTNAWLNLEWNDYN 64


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 5   LETDLTSDMLLSGSWKTLEFKPYN 76
           ++ D  + +L + +W  LE+  YN
Sbjct: 41  IDVDEKNQILTTNAWLNLEWNDYN 64


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -2

Query: 268 CREHPGWVLLRLEQCIKVPE*TLNVFICWHLRETHFQEYLTEF 140
           CR  P   L+  E  I + + T NV + W   +     Y+  F
Sbjct: 266 CRPDPPQNLVINESIIDLSQQTYNVHLMWSKPDLIPNYYIAHF 308


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,818
Number of Sequences: 336
Number of extensions: 3367
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)