Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10940
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 126 3e-30
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 33 0.035
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 27 3.0
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub... 27 3.0
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 26 5.2
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 26 5.2
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.9
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ... 25 6.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 9.1
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 9.1
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 126 bits (304), Expect = 3e-30
Identities = 55/85 (64%), Positives = 66/85 (77%)
Frame = +2
Query: 2 KLETDLTSDMLLSGSWKTLEFKPYNFDALGQPPECGHLHPLLKVRSEFREIFLEMGFTEM 181
KL TDLT++M+ S SW++ +FK YNF A G PP G LHPL+KVR EFR+ F E+GF EM
Sbjct: 186 KLNTDLTAEMITSRSWESAKFKSYNFAAEGIPPAGGCLHPLMKVREEFRKFFFELGFEEM 245
Query: 182 PTNKYIESSFWNFDALFQPQQHPAR 256
PTN ++ES FWNFDALF PQQH AR
Sbjct: 246 PTNNFVESGFWNFDALFVPQQHSAR 270
Score = 79.0 bits (186), Expect = 5e-16
Identities = 40/75 (53%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Frame = +1
Query: 250 SQDAHDTFFMSSPAATTEFP-MEYLERVKKVHSKGGYGSQ-GYRYDWKIEEAQKNLLRTH 423
++DA DTFF+ PA+T + P EY+ RVK H GG GYR + +EE +K +LRTH
Sbjct: 269 ARDAQDTFFLKVPASTDKLPDPEYVARVKATHENGGETKGIGYRAPFSLEETRKLVLRTH 328
Query: 424 TTAVSARMLYRLAHN 468
TTAVSA MLY+LA N
Sbjct: 329 TTAVSANMLYKLAQN 343
Score = 64.9 bits (151), Expect = 9e-12
Identities = 28/42 (66%), Positives = 34/42 (80%)
Frame = +2
Query: 509 FRNETLDATHLAEFHQVEGVVADRGLGLADLITVLDAFFKRL 634
FRNET+DATHLAEFHQVEGV+ DR + L DLI L+ FF ++
Sbjct: 357 FRNETVDATHLAEFHQVEGVICDRNITLGDLIGFLEVFFGKM 398
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 462 AQPEFTPQKYFSIDKV 509
AQ F P KYFSID+V
Sbjct: 341 AQNGFHPAKYFSIDRV 356
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 33.1 bits (72), Expect = 0.035
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 110 HLHPLLKVRSEFREIFLEMGFTEMPTNKYIESSFWNFDALFQPQQH 247
H+ PL ++RSE E + FT P + + + N D +F PQ H
Sbjct: 47 HMFPLARIRSELSEQDSSISFTHDPLHIPLPNPSNNNDNIFHPQVH 92
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 509 FRNETLDATHLAEFHQVEGVVA 574
FRNE +DATH EF E A
Sbjct: 281 FRNEGIDATHNPEFTSCEAYCA 302
>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 490
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +3
Query: 345 QRWIWLPGLQIRLEDRGGAEEPAADAHDGGQRQDAVQTRAQPEFTPQKYFSIDKVSATRP 524
QR++ L + E E+P A +HD ++ +Q + + +K S +A++
Sbjct: 329 QRYLKLLEKNLAYESDEEDEDPYASSHDASSEEEVLQEEEELQKREEKLKSRFSANASKT 388
Query: 525 WTP 533
TP
Sbjct: 389 NTP 391
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.8 bits (54), Expect = 5.2
Identities = 21/85 (24%), Positives = 32/85 (37%)
Frame = +3
Query: 249 QPGCSRHILYVLACCHHGVPHGIPGEGEEGAQQRWIWLPGLQIRLEDRGGAEEPAADAHD 428
QP CS C HG+P + QR +++ L RLE +D
Sbjct: 25 QPACSN-------CVSHGIPCVFTARPKRRTGQRQMYIKSLVSRLEQMESTLRSVIPNYD 77
Query: 429 GGQRQDAVQTRAQPEFTPQKYFSID 503
Q+ D + P TP+ Y ++
Sbjct: 78 --QQPDII----HPSSTPKNYHDLN 96
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 384 EDRGGAEEPAADAHDGGQRQDAVQTRAQPEFTPQK 488
ED E PA Q++ +Q R QP PQ+
Sbjct: 94 EDATWVEAPATRKTQDKQKKQQIQLRDQPSILPQE 128
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.4 bits (53), Expect = 6.9
Identities = 21/90 (23%), Positives = 35/90 (38%)
Frame = +1
Query: 247 PSQDAHDTFFMSSPAATTEFPMEYLERVKKVHSKGGYGSQGYRYDWKIEEAQKNLLRTHT 426
P +D HDT+ SS +T S + + R ++ + KN+L
Sbjct: 233 PPKDDHDTYLNSSEDSTLSPLPSRSSDTNDPQSDSQHVLRQERMRIELRQYIKNILNDDE 292
Query: 427 TAVSARMLYRLAHNQSSLRRSTLASIRFPQ 516
++ +L L + +L S L I F Q
Sbjct: 293 LHLTEEVLSFLTDDPVTLTASELTDINFRQ 322
>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 429
Score = 25.4 bits (53), Expect = 6.9
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +2
Query: 509 FRNETLDATHLAEFHQVEGVV 571
+R + +D++H FHQ+EG +
Sbjct: 142 YRRDEVDSSHYPIFHQMEGAL 162
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +2
Query: 116 HPLLKVRSEFREIFLEMGFTEMPTNKYIESSFWNFDALFQPQQHPAR 256
HP+ +R + F + + I S NFD+L P+ H +R
Sbjct: 50 HPICSLRQLLEQQFQKFEMNNVQKESPIVSVETNFDSLGFPKTHVSR 96
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.0 bits (52), Expect = 9.1
Identities = 19/78 (24%), Positives = 32/78 (41%)
Frame = +3
Query: 300 GVPHGIPGEGEEGAQQRWIWLPGLQIRLEDRGGAEEPAADAHDGGQRQDAVQTRAQPEFT 479
G+ +PG + A QR G+Q + R G ++P A G Q +T QP+
Sbjct: 574 GMQPQMPGMQQPMAPQR----TGMQPMMPQRTGMQQPMAPQRTGMQPMMPQRTGMQPQMP 629
Query: 480 PQKYFSIDKVSATRPWTP 533
+ + + +P P
Sbjct: 630 GMQQPMAPQRTGMQPMMP 647
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -2
Query: 529 VQGLVAETLSMLKYFCGVNS 470
+QG++A LS++ Y+C + S
Sbjct: 543 IQGMIAVFLSLVYYYCPIES 562
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,539,058
Number of Sequences: 5004
Number of extensions: 52333
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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