Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10940
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0116 - 13022648-13022701,13022781-13022835,13023050-130231... 136 2e-32
01_07_0257 - 42343493-42343528,42344215-42344271,42344272-423443... 32 0.44
05_03_0373 - 13194723-13195847,13196219-13196809 28 7.1
12_02_0617 + 21256745-21256943,21257454-21257647,21257836-212580... 27 9.4
12_02_0169 + 14835108-14835542 27 9.4
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 27 9.4
>10_07_0116 -
13022648-13022701,13022781-13022835,13023050-13023175,
13023274-13023340,13024104-13024200,13024362-13024461,
13024527-13024611,13024679-13024755,13024888-13024926,
13025001-13025038,13025118-13025208,13025536-13025628,
13025726-13025781,13025844-13025915,13026078-13026134,
13026397-13026495,13026599-13026964
Length = 523
Score = 136 bits (328), Expect = 2e-32
Identities = 60/85 (70%), Positives = 68/85 (80%)
Frame = +2
Query: 2 KLETDLTSDMLLSGSWKTLEFKPYNFDALGQPPECGHLHPLLKVRSEFREIFLEMGFTEM 181
KL TD+T + L SG WK LEFK YNF A GQP G++ PLL+VR E + IFL+MGFTEM
Sbjct: 236 KLATDVTQEHLRSGDWKDLEFKDYNFGAQGQPIAIGYVQPLLEVREEIQNIFLQMGFTEM 295
Query: 182 PTNKYIESSFWNFDALFQPQQHPAR 256
PTN Y+ESSFWNFDALFQPQQHPAR
Sbjct: 296 PTNNYVESSFWNFDALFQPQQHPAR 320
Score = 121 bits (291), Expect = 6e-28
Identities = 50/75 (66%), Positives = 65/75 (86%)
Frame = +1
Query: 247 PSQDAHDTFFMSSPAATTEFPMEYLERVKKVHSKGGYGSQGYRYDWKIEEAQKNLLRTHT 426
P++D+HDTFF+ +PAAT + P +YLE+VK+VH +GGYGS+GY YDWK +EA+KNLLRTHT
Sbjct: 318 PARDSHDTFFLEAPAATKQLPEDYLEKVKEVHQRGGYGSKGYGYDWKRDEAEKNLLRTHT 377
Query: 427 TAVSARMLYRLAHNQ 471
TAVS RMLY+LA +
Sbjct: 378 TAVSTRMLYKLAQEK 392
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +2
Query: 509 FRNETLDATHLAEFHQVEGV 568
FRNE +D THLAEFHQ+EG+
Sbjct: 406 FRNEAVDRTHLAEFHQIEGM 425
>01_07_0257 -
42343493-42343528,42344215-42344271,42344272-42344316,
42344374-42344518,42344606-42344733,42344939-42345044,
42345113-42345189,42345264-42345361,42345945-42346058,
42346154-42346294,42346418-42346502,42346721-42346849
Length = 386
Score = 31.9 bits (69), Expect = 0.44
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 432 GQRQDAVQTRAQPEFTPQKYFSIDKVSA 515
G +D Q + QP+F P Y S+D+V+A
Sbjct: 19 GTSKDKFQAKGQPKFIPDNYSSVDEVTA 46
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Frame = +3
Query: 294 HHGVPHGIPGEGEEGAQQRWIWLPGLQIRLEDRGG-AEEPAADAHDGGQRQDAVQTRAQP 470
HH V G+ +G+ G +R WL R+E GG AE A R AV P
Sbjct: 108 HHAVRVGLRVDGDGGDDERGSWLDCGAARVEVGGGWAEINGAFRLRASPRVAAVHVHGAP 167
Query: 471 EFTPQKYFSIDKVSATR 521
K + + R
Sbjct: 168 AGVDVKVMDLQVYATDR 184
>12_02_0617 +
21256745-21256943,21257454-21257647,21257836-21258042,
21258115-21258232,21258325-21258401,21258513-21258692,
21259312-21259356,21260309-21260413,21261115-21261261
Length = 423
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 509 FRNETLDATHLAEFHQVEG 565
+R +++D+TH FHQ+EG
Sbjct: 185 YRRDSIDSTHYPCFHQMEG 203
>12_02_0169 + 14835108-14835542
Length = 144
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +3
Query: 318 PGEGEEGAQQRWIWLPGLQIRLEDRGGAEEPAADAH-DGGQRQDAVQTR 461
P EG EG ++ + PG E+ GAE A DG AV R
Sbjct: 28 PREGREGGKEATVHTPGATTATEEAAGAEGGGGAARVDGDGGAPAVGDR 76
>07_03_1567 - 27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 313 EYLERVKKVHSKGGYGSQG 369
E LER +KV +KGG G +G
Sbjct: 1067 EILERAEKVETKGGEGEEG 1085
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,868,975
Number of Sequences: 37544
Number of extensions: 405346
Number of successful extensions: 1407
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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