Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10940
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10782| Best HMM Match : No HMM Matches (HMM E-Value=.)              96   2e-20
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_54687| Best HMM Match : Trp_Tyr_perm (HMM E-Value=2.2)              30   1.4  
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)           29   4.2  

>SB_10782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 41/57 (71%), Positives = 49/57 (85%)
 Frame = +2

Query: 2   KLETDLTSDMLLSGSWKTLEFKPYNFDALGQPPECGHLHPLLKVRSEFREIFLEMGF 172
           +LE DLT+DMLLSGSW+  EFK YNFDALG P   GHLHPL+KVR++FR+IFLEMG+
Sbjct: 156 RLEADLTADMLLSGSWRDKEFKAYNFDALGTPVTSGHLHPLMKVRAQFRQIFLEMGY 212



 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 31/42 (73%), Positives = 35/42 (83%)
 Frame = +2

Query: 509 FRNETLDATHLAEFHQVEGVVADRGLGLADLITVLDAFFKRL 634
           FRNETLDATHLAEFHQ+EG+VADR L L DLI  L  FF++L
Sbjct: 259 FRNETLDATHLAEFHQIEGLVADRNLTLGDLIGTLHQFFRKL 300



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 26/35 (74%), Positives = 31/35 (88%)
 Frame = +1

Query: 367 GYRYDWKIEEAQKNLLRTHTTAVSARMLYRLAHNQ 471
           GY+Y+WK EEA+KNLLRTHTTAVSARMLY+L   +
Sbjct: 211 GYQYEWKTEEAKKNLLRTHTTAVSARMLYKLGQQE 245


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +3

Query: 300  GVPHGIPGEGEEGAQQRWIWL-PGLQIRLEDRGGAEEPAADAHDGGQRQDAVQTRAQPEF 476
            G+  GI  + EE    R   L   L+ R ED G  E  A +A    ++ +A +T  Q EF
Sbjct: 4706 GIKIGITVQQEENIMVRLEELMASLEKRKEDHGNVEPCAVEAESIREQIEAFKT-VQSEF 4764

Query: 477  TPQKYFSIDKVSAT 518
             P K  S+++V +T
Sbjct: 4765 GPDK-DSVEEVKST 4777


>SB_54687| Best HMM Match : Trp_Tyr_perm (HMM E-Value=2.2)
          Length = 369

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -2

Query: 187 CWHLRETHFQEYLTEFRPYFQEGMEVTTFWWLA*SI 80
           C H R+ +F+  L E  PY+ + +++ T++ L  S+
Sbjct: 158 CRHWRDDNFENMLAEASPYYSKVLQIHTYFLLLESV 193


>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
          Length = 1217

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +3

Query: 330 EEGAQQRWIWLPGLQIRLEDRGGAEEPAADAHDGGQRQDA 449
           + G  +   W P  Q    DRGG      D  D G R+DA
Sbjct: 863 DRGGDKPGAWRPKWQREEPDRGGDRWRGGDRRDDGPRRDA 902


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,489,632
Number of Sequences: 59808
Number of extensions: 407719
Number of successful extensions: 1131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)