Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10940
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-6|AAO21394.1|  496|Caenorhabditis elegans Phenylalanyl ...   146   1e-35
AF000263-5|AAG00015.1|  552|Caenorhabditis elegans Phenylalanyl ...   146   1e-35
Z92780-4|CAI46549.1|  642|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AL021466-4|CAI46582.1|  642|Caenorhabditis elegans Hypothetical ...    29   3.7  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AL132948-8|CAC51068.1|  230|Caenorhabditis elegans Hypothetical ...    28   4.9  
AL132943-13|CAC14396.3|  458|Caenorhabditis elegans Hypothetical...    28   6.4  
AL117207-24|CAB60398.3|  458|Caenorhabditis elegans Hypothetical...    28   6.4  
AB096637-1|BAC76737.1|  458|Caenorhabditis elegans mitochondrial...    28   6.4  

>AF000263-6|AAO21394.1|  496|Caenorhabditis elegans Phenylalanyl (f)
           trna synthetaseprotein 1, isoform b protein.
          Length = 496

 Score =  146 bits (354), Expect = 1e-35
 Identities = 62/85 (72%), Positives = 72/85 (84%)
 Frame = +2

Query: 2   KLETDLTSDMLLSGSWKTLEFKPYNFDALGQPPECGHLHPLLKVRSEFREIFLEMGFTEM 181
           K E DLT +M+ SGSWK ++FK YNFD+LG  P  GHLHPL+KVRSEFR+IF  MGF+EM
Sbjct: 187 KQEADLTPEMIASGSWKDMQFKKYNFDSLGVVPSSGHLHPLMKVRSEFRQIFFSMGFSEM 246

Query: 182 PTNKYIESSFWNFDALFQPQQHPAR 256
            TN+Y+ESSFWNFDALFQPQQHPAR
Sbjct: 247 ATNRYVESSFWNFDALFQPQQHPAR 271



 Score =  133 bits (321), Expect = 1e-31
 Identities = 63/86 (73%), Positives = 71/86 (82%)
 Frame = +1

Query: 247 PSQDAHDTFFMSSPAATTEFPMEYLERVKKVHSKGGYGSQGYRYDWKIEEAQKNLLRTHT 426
           P++DAHDTFF+S PA +T+FP +YLERVK VHSKGGYGS GY YDWKIEEAQKN+LRTHT
Sbjct: 269 PARDAHDTFFVSDPAISTKFPEDYLERVKTVHSKGGYGSAGYNYDWKIEEAQKNVLRTHT 328

Query: 427 TAVSARMLYRLAHNQSSLRRSTLASI 504
           TAVSAR LY+LA  Q   R S L SI
Sbjct: 329 TAVSARQLYQLA--QEGFRPSKLFSI 352



 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 30/42 (71%), Positives = 35/42 (83%)
 Frame = +2

Query: 509 FRNETLDATHLAEFHQVEGVVADRGLGLADLITVLDAFFKRL 634
           FRNETLDATHLAEFHQVEGV+A++ L LA LI +   FFK+L
Sbjct: 356 FRNETLDATHLAEFHQVEGVIAEKNLSLAHLIGIFTEFFKKL 397


>AF000263-5|AAG00015.1|  552|Caenorhabditis elegans Phenylalanyl (f)
           trna synthetaseprotein 1, isoform a protein.
          Length = 552

 Score =  146 bits (354), Expect = 1e-35
 Identities = 62/85 (72%), Positives = 72/85 (84%)
 Frame = +2

Query: 2   KLETDLTSDMLLSGSWKTLEFKPYNFDALGQPPECGHLHPLLKVRSEFREIFLEMGFTEM 181
           K E DLT +M+ SGSWK ++FK YNFD+LG  P  GHLHPL+KVRSEFR+IF  MGF+EM
Sbjct: 243 KQEADLTPEMIASGSWKDMQFKKYNFDSLGVVPSSGHLHPLMKVRSEFRQIFFSMGFSEM 302

Query: 182 PTNKYIESSFWNFDALFQPQQHPAR 256
            TN+Y+ESSFWNFDALFQPQQHPAR
Sbjct: 303 ATNRYVESSFWNFDALFQPQQHPAR 327



 Score =  133 bits (321), Expect = 1e-31
 Identities = 63/86 (73%), Positives = 71/86 (82%)
 Frame = +1

Query: 247 PSQDAHDTFFMSSPAATTEFPMEYLERVKKVHSKGGYGSQGYRYDWKIEEAQKNLLRTHT 426
           P++DAHDTFF+S PA +T+FP +YLERVK VHSKGGYGS GY YDWKIEEAQKN+LRTHT
Sbjct: 325 PARDAHDTFFVSDPAISTKFPEDYLERVKTVHSKGGYGSAGYNYDWKIEEAQKNVLRTHT 384

Query: 427 TAVSARMLYRLAHNQSSLRRSTLASI 504
           TAVSAR LY+LA  Q   R S L SI
Sbjct: 385 TAVSARQLYQLA--QEGFRPSKLFSI 408



 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 30/42 (71%), Positives = 35/42 (83%)
 Frame = +2

Query: 509 FRNETLDATHLAEFHQVEGVVADRGLGLADLITVLDAFFKRL 634
           FRNETLDATHLAEFHQVEGV+A++ L LA LI +   FFK+L
Sbjct: 412 FRNETLDATHLAEFHQVEGVIAEKNLSLAHLIGIFTEFFKKL 453


>Z92780-4|CAI46549.1|  642|Caenorhabditis elegans Hypothetical
           protein C45G3.5 protein.
          Length = 642

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/82 (25%), Positives = 36/82 (43%)
 Frame = -1

Query: 329 TLSRYSMGNSVVAAGEDIKNVS*ASWLGAVEVGTVHQSSRMNSQCIYLLASP*NPFPRIS 150
           T  + +   SV +  ED++NV  ++   A  V  + Q SR  S C+    +      +  
Sbjct: 318 TSKKINESESVESVMEDVRNVDWSNLDVATTVRMLVQFSRKESACLLREITSATNVDQAI 377

Query: 149 HGIPTLLSRGDGGDHILVVGLK 84
             I  LL +G     +++ GLK
Sbjct: 378 RDIHDLLIKGSCAHDVMLFGLK 399


>AL021466-4|CAI46582.1|  642|Caenorhabditis elegans Hypothetical
           protein C45G3.5 protein.
          Length = 642

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/82 (25%), Positives = 36/82 (43%)
 Frame = -1

Query: 329 TLSRYSMGNSVVAAGEDIKNVS*ASWLGAVEVGTVHQSSRMNSQCIYLLASP*NPFPRIS 150
           T  + +   SV +  ED++NV  ++   A  V  + Q SR  S C+    +      +  
Sbjct: 318 TSKKINESESVESVMEDVRNVDWSNLDVATTVRMLVQFSRKESACLLREITSATNVDQAI 377

Query: 149 HGIPTLLSRGDGGDHILVVGLK 84
             I  LL +G     +++ GLK
Sbjct: 378 RDIHDLLIKGSCAHDVMLFGLK 399


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +1

Query: 367  GYRYDWKIEEAQKNLLRTHTTAVSARMLYRLAHNQSSLRRSTLAS 501
            GY+  W I+  + N  R+HTT V        A    S   +TL S
Sbjct: 890  GYQ-QWNIDTVKMNCARSHTTTVEPSTPLETASTSQSTPSATLTS 933


>AL132948-8|CAC51068.1|  230|Caenorhabditis elegans Hypothetical
           protein Y39B6A.9 protein.
          Length = 230

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 346 KGGYGSQGYRYDWKIEEAQKN 408
           +GGY  QG+   WK  EAQKN
Sbjct: 195 QGGYAKQGHEEGWK-NEAQKN 214


>AL132943-13|CAC14396.3|  458|Caenorhabditis elegans Hypothetical
           protein Y60A3A.13 protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 509 FRNETLDATHLAEFHQVEGV 568
           +R + +D TH   FHQ+EGV
Sbjct: 177 YRRDEVDRTHYPCFHQIEGV 196


>AL117207-24|CAB60398.3|  458|Caenorhabditis elegans Hypothetical
           protein Y60A3A.13 protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 509 FRNETLDATHLAEFHQVEGV 568
           +R + +D TH   FHQ+EGV
Sbjct: 177 YRRDEVDRTHYPCFHQIEGV 196


>AB096637-1|BAC76737.1|  458|Caenorhabditis elegans mitochondrial
           phenylalanyl-tRNAsynthetase protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 509 FRNETLDATHLAEFHQVEGV 568
           +R + +D TH   FHQ+EGV
Sbjct: 177 YRRDEVDRTHYPCFHQIEGV 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,271,265
Number of Sequences: 27780
Number of extensions: 315090
Number of successful extensions: 950
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)