Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10940
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39280.1 68417.m05563 phenylalanyl-tRNA synthetase, putative ...   130   8e-31
At4g14840.1 68417.m02281 expressed protein                             33   0.16 
At3g25620.1 68416.m03189 ABC transporter family protein similar ...    30   1.1  
At4g07990.1 68417.m01280 DNAJ heat shock N-terminal domain-conta...    29   3.4  
At3g58140.1 68416.m06483 phenylalanyl-tRNA synthetase class IIc ...    28   4.5  
At4g11450.1 68417.m01843 expressed protein                             28   6.0  
At1g20720.1 68414.m02596 helicase-related similar to BRCA1-bindi...    27   7.9  

>At4g39280.1 68417.m05563 phenylalanyl-tRNA synthetase, putative /
           phenylalanine--tRNA ligase, putative similar to
           SP|Q9Y285 Phenylalanyl-tRNA synthetase alpha chain (EC
           6.1.1.20) (Phenylalanine- -tRNA ligase alpha chain)
           (PheRS) {Homo sapiens}; contains Pfam profile PF01409:
           tRNA synthetases class II core domain (F)
          Length = 485

 Score =  130 bits (314), Expect = 8e-31
 Identities = 58/85 (68%), Positives = 68/85 (80%)
 Frame = +2

Query: 2   KLETDLTSDMLLSGSWKTLEFKPYNFDALGQPPECGHLHPLLKVRSEFREIFLEMGFTEM 181
           K+ TDLT + L +  WK LEFK YNF A G P + GHLH LLKVR +F++IF++MGF EM
Sbjct: 178 KVATDLTRENLQN--WKELEFKEYNFKAKGAPVDAGHLHALLKVRKQFKDIFVQMGFEEM 235

Query: 182 PTNKYIESSFWNFDALFQPQQHPAR 256
           PTN Y+ESSFWNFDALFQPQQHPAR
Sbjct: 236 PTNNYVESSFWNFDALFQPQQHPAR 260



 Score =  115 bits (277), Expect = 2e-26
 Identities = 49/72 (68%), Positives = 59/72 (81%)
 Frame = +1

Query: 247 PSQDAHDTFFMSSPAATTEFPMEYLERVKKVHSKGGYGSQGYRYDWKIEEAQKNLLRTHT 426
           P++D+HDTFF+  P+ T   P +Y+ERVK+VH  GGYGS+GY YDWK EEA KNLLRTHT
Sbjct: 258 PARDSHDTFFLKVPSTTRTLPEDYVERVKRVHESGGYGSRGYNYDWKREEANKNLLRTHT 317

Query: 427 TAVSARMLYRLA 462
           TAVS+RMLY LA
Sbjct: 318 TAVSSRMLYALA 329



 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 29/42 (69%), Positives = 34/42 (80%)
 Frame = +2

Query: 509 FRNETLDATHLAEFHQVEGVVADRGLGLADLITVLDAFFKRL 634
           FRNE +D THLAEFHQ+EG++ DRGL L DLI VL+ FF RL
Sbjct: 345 FRNEAVDRTHLAEFHQIEGLICDRGLTLGDLIGVLEDFFSRL 386



 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 462 AQPEFTPQKYFSIDKV 509
           AQ  F P+KYFSID+V
Sbjct: 329 AQKPFVPKKYFSIDRV 344


>At4g14840.1 68417.m02281 expressed protein
          Length = 555

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 155 FLEMGFTEMPTNKYIESSFWNFDALFQPQQ 244
           +LE  F +M  N +  S  WN  ALFQP +
Sbjct: 137 YLETSFPDMDANAFFASFTWNIPALFQPAE 166


>At3g25620.1 68416.m03189 ABC transporter family protein similar to
           GB:AAC61893 from [Bactrocera tryoni] (Insect Mol. Biol.
           6 (4), 343-356 (1997))
          Length = 467

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = -2

Query: 310 WGTPWWQQ----ART*RMCREHPGWVLLRLEQCIKVPE*TLNVFICWHLRETHFQEYLTE 143
           W T WW Q     +     R H  +  LR+   + V    L+  + WH R  H Q+ + +
Sbjct: 405 WPTSWWMQFSVLLKRGLKERSHESFSGLRIFMVMSVS--LLSGLLWWHSRVAHLQDQVKQ 462

Query: 142 FRPYF 128
            +P++
Sbjct: 463 NKPWY 467


>At4g07990.1 68417.m01280 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI5 DnaJ
           homolog subfamily B member 10 Mus musculus ; contains
           Pfam profile PF00226 DnaJ domain
          Length = 347

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +1

Query: 355 YGSQGYRYDW--KIEEAQKNLLRTHTTAVSARMLYRLAHNQSSL 480
           Y  Q  R+DW  K E + +N    H      R +Y L+H+ S L
Sbjct: 245 YHQQFQRHDWYWKTESSHRNQRTNHQEPSDQRRVYPLSHHYSVL 288


>At3g58140.1 68416.m06483 phenylalanyl-tRNA synthetase class IIc
           family protein similar to phenylalanine-tRNA synthetase
           [Homo sapiens] GI:3983103; contains Pfam profile
           PF01409: tRNA synthetases class II core domain (F)
          Length = 429

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 509 FRNETLDATHLAEFHQVEG 565
           +R +++D+TH   FHQ+EG
Sbjct: 184 YRRDSIDSTHYPVFHQMEG 202


>At4g11450.1 68417.m01843 expressed protein 
          Length = 694

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 432 GQRQDAVQTRAQPEFTPQKYFSIDKVSATRPWT 530
           G   D ++ R+QP+ T Q Y  ++  + T PW+
Sbjct: 419 GDASDTMKQRSQPKRTSQSY-DLEASNGTNPWS 450


>At1g20720.1 68414.m02596 helicase-related similar to BRCA1-binding
           helicase-like protein BACH1 (GI:13661819) Homo
           sapiens].;
          Length = 1169

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -1

Query: 497 AKVLLRSELWLCASLYSILALTAVVCVRSRFFCASSIF 384
           +K LL    W C   Y  L   A  C+R RF   + IF
Sbjct: 699 SKSLLGGSEWYCQQAYRALNQAAGRCIRHRFDYGAIIF 736


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,693,010
Number of Sequences: 28952
Number of extensions: 293838
Number of successful extensions: 814
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)