Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10931
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    29   0.76 
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   2.3  

>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 26/76 (34%), Positives = 36/76 (47%)
 Frame = -1

Query: 495 KDNNIKATSADGVVKPPEANERLV*G*TKKMNCLFILFVSFNSRVHLKMPKGSWNISSFY 316
           KD N K+ SA  +VK P+   R V G   K   L  LF  F  R+     + S  +  FY
Sbjct: 265 KDENSKSKSAASLVK-PKIGIRHVLGGLYKSEGLLGLFRGFGPRIFWTSSQSSL-MFVFY 322

Query: 315 QYVIRI*I*FLKKNTI 268
           + +IR+   F K N +
Sbjct: 323 EGIIRL---FNKNNVL 335


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1158

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 281  KKTQFINKKPGNSSSSIIITEVKLP 207
            KKTQ + K  GN ++  I TEV++P
Sbjct: 956  KKTQSLKKPFGNQATLKIFTEVQMP 980


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,396
Number of Sequences: 5004
Number of extensions: 46741
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)