Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10914X
         (333 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       24   0.36 
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    24   0.36 
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    24   0.36 
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   3.4  

>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 24.2 bits (50), Expect = 0.36
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 65  FIGYRYRILKHQRAIRCRNEE-DGGRNEQIQIRTHEQRKQQFLQEHN*HDDI 217
           F   R ++ K  RA++  NE+    R EQ + +  +Q KQQ +++   H  I
Sbjct: 54  FQNRRMKLKKELRAVKEINEQARREREEQERHKQQQQEKQQKIEQQT-HSSI 104


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 24.2 bits (50), Expect = 0.36
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 65  FIGYRYRILKHQRAIRCRNEE-DGGRNEQIQIRTHEQRKQQFLQEHN*HDDI 217
           F   R ++ K  RA++  NE+    R EQ + +  +Q KQQ +++   H  I
Sbjct: 205 FQNRRMKLKKELRAVKEINEQARREREEQERHKQQQQEKQQKIEQQT-HSSI 255


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 24.2 bits (50), Expect = 0.36
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 65  FIGYRYRILKHQRAIRCRNEE-DGGRNEQIQIRTHEQRKQQFLQEHN*HDDI 217
           F   R ++ K  RA++  NE+    R EQ + +  +Q KQQ +++   H  I
Sbjct: 264 FQNRRMKLKKELRAVKEINEQARREREEQERHKQQQQEKQQKIEQQT-HSSI 314


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = +2

Query: 113 CRNEEDGGRNEQIQI---RTHEQRKQQFLQEHN 202
           C +  DGGRNE I +      E  + +F +E N
Sbjct: 249 CNSYVDGGRNEIILLCEKVAKEDIQVRFFEEKN 281


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,583
Number of Sequences: 336
Number of extensions: 932
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6473381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)