Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10914X
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr...    27   0.57 
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    27   0.75 
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    27   0.99 
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb...    26   1.3  
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||...    26   1.3  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    26   1.7  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    26   1.7  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    25   3.0  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    25   4.0  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    24   5.3  
SPAC105.02c |||ankyrin repeat protein, unknown biological role|S...    24   5.3  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    24   5.3  
SPBC16E9.15 |||heat shock factor binding protein |Schizosaccharo...    24   7.0  
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz...    24   7.0  
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     24   7.0  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    24   7.0  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    23   9.2  
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    23   9.2  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    23   9.2  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    23   9.2  
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    23   9.2  
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    23   9.2  

>SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 112

 Score = 27.5 bits (58), Expect = 0.57
 Identities = 13/56 (23%), Positives = 30/56 (53%)
 Frame = +3

Query: 12  RKMADSGLKRNIPIKLGDLSVIDTEFSSIRERLDAEMRKMEEEMSKFRSELMNRES 179
           +++ D G  + +   LG +  + ++ +S+R  LDAEM  + E++   + +    E+
Sbjct: 41  KELEDVGEDKAVYTSLGKM-FMKSDLASVRTHLDAEMASLREDIEALQKKQTYHET 95


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 0.75
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 39  RNIPIKLGDLSVIDTEFSSIRERLDAEMRKMEEEMSKFRSELMNR 173
           + + + L D+S+ D   + I  R+   +RK E      RS L++R
Sbjct: 138 KKMDVSLEDISLDDAALTPIPARMQTPLRKPENNPHTGRSALLHR 182


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 26.6 bits (56), Expect = 0.99
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +3

Query: 24  DSGLKRNIPIKLGDLSVIDTEFSSIRERLDAEMRKMEEEMSKFRSELMNRESN 182
           D  L+ +I   + D+   D     IRE LDA +  ++  + ++     N  +N
Sbjct: 496 DINLETSIKTYISDIYFADLSLDEIREELDARLPLLKSIVERYLISKKNDNNN 548


>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 323

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 75  IDTEFSSIRERLDAEMRKMEE-EMSKFRSELMNRESNN 185
           ID  F S+ +RLD+  +KME  +    RS ++ R+  N
Sbjct: 200 IDRRFDSMEQRLDSMDQKMETIDARSCRSIMLTRKLEN 237


>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 75  IDTEFSSIRERLDAEMRKMEE-EMSKFRSELMNRESNN 185
           ID  F S+ +RLD+  +KME  +    RS ++ R+  N
Sbjct: 200 IDRRFDSMEQRLDSMDQKMETIDARSCRSIMLTRKLEN 237


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 60  GDLSVIDTEFSS-IRERLDAEMRKMEEEMSK 149
           G  + +D+E    IRE  +AE++KMEE+  K
Sbjct: 468 GVFTRVDSELGRRIREATEAEVKKMEEKAPK 498


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 54  KLGDLSVIDTEFSSIRERLDAEMRKMEEEMSKFRSELMN 170
           K  DLSV++ +     E  + E  K EEE  K + E+ N
Sbjct: 256 KFADLSVLEEDDDDEDEDEELEGEKEEEEEEKEKPEISN 294


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 75  IDTEFSSIRERLDAEMRK 128
           ++ E + +RER+D EMRK
Sbjct: 349 LEQELNFLRERIDVEMRK 366


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 12/53 (22%), Positives = 28/53 (52%)
 Frame = +3

Query: 27  SGLKRNIPIKLGDLSVIDTEFSSIRERLDAEMRKMEEEMSKFRSELMNRESNN 185
           S L+  +  KL ++ ++  +      +  +   K+EE +SK+ + + ++E NN
Sbjct: 383 SSLRIELEDKLAEIDMLRNKLLKEEHKHHSTSEKLEE-LSKYVASIQDKERNN 434


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = +3

Query: 69  SVIDTEFSSIRERLDAEMRKMEEEMS 146
           S ++ E +SIRERL++ + + +EE++
Sbjct: 272 SDLELELTSIRERLESLILEKQEEIN 297


>SPAC105.02c |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 170

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 242 ACRARHWDSLNSPLIQDEGDG 304
           ACR+ + D L   + Q EGDG
Sbjct: 15  ACRSNNVDMLEEVVHQQEGDG 35


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 37  REISPSSLAIYRLSIQNSQASESD 108
           +E S S+ +IY   +QN+Q+ +SD
Sbjct: 253 KEESSSNKSIYHDELQNNQSDDSD 276


>SPBC16E9.15 |||heat shock factor binding protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 75

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 60  GDLSVIDTEFSSIRERLDAEMRKMEEEMSKFRSELMNRESN 182
           GD   +  +FS   E +   + ++EE M     E MN++S+
Sbjct: 31  GDFETLQKQFSEKLETMSTRLDQLEESM----REAMNKKSS 67


>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
           Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 99  RERLDAEMRKMEEEMSKFRSELMNR 173
           R+RL  ++R ++EE +  R +  NR
Sbjct: 116 RDRLQEKLRALQEESANLRRQRENR 140


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 26  QWSQEKYPHQAWRFIGYRYRILKH 97
           QW ++K    AWR I  R ++  H
Sbjct: 324 QWVKQKKVQDAWRTIAEREKLNAH 347


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 42  NIPIKLGDLSVIDTEFSSIRERLDAEMRKMEEEMSKFRSELMN 170
           NIP +LG +  + T+ +    + + EM+K+      F +E M+
Sbjct: 394 NIPEELGRIEYVLTDKTGTLTQNEMEMKKLHVGTMGFSAESMD 436


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 36  KRNIPIKLGDLSVIDTEFSSIRERLDAEMRKMEEEMSKFRSELMNRE 176
           K+N  +K G+ S  ++EF +  ER+     K   + +K  +   NR+
Sbjct: 341 KQNESVKQGETSFGNSEFKNPLERVAYYALKSAAQKAKLIAAFENRQ 387


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 72  VIDTEFSSIRERLDAEMRKMEEEMSKFRSELMNRES 179
           V  ++ S I    D+E +K E+E S +++E  +  S
Sbjct: 96  VKSSKLSPISNMEDSEDKKEEDESSSYKNEFKSSSS 131


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 99  RERLDAEMRKMEEEMSKFRSELMNRESN 182
           R R +   R++EEE  +  + L+ R+SN
Sbjct: 208 RRRKNQSERRLEEEKMETINRLLKRQSN 235


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 90  SSIRERLDAEMRKMEEEMSKFRSELMNRES 179
           ++IRE +   +  +EE  S+F +EL+  ES
Sbjct: 154 AAIREDVSGNLVALEELQSEFNTELLLVES 183


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 89  LKHQRAIRCRNEEDGGR 139
           LK+QR+ RC  EE  GR
Sbjct: 92  LKYQRSARCTAEERVGR 108


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 89  LKHQRAIRCRNEEDGGR 139
           LK+QR+ RC  EE  GR
Sbjct: 92  LKYQRSARCTAEERVGR 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,082,855
Number of Sequences: 5004
Number of extensions: 17004
Number of successful extensions: 70
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)