Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10914X
(333 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 30 0.52
07_01_0886 - 7356591-7356662,7357002-7357079,7357373-7357444,735... 27 2.8
09_06_0260 - 21911358-21911438,21911715-21911828,21911911-219120... 27 4.9
08_02_0482 - 17643603-17643955,17644024-17646604 27 4.9
07_03_0943 - 22778877-22780970,22781376-22781480,22781481-227820... 27 4.9
04_04_1184 + 31558678-31558707,31559485-31559644,31559732-315603... 26 6.4
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 26 6.4
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 26 6.4
06_03_0040 - 15801686-15801993,15802030-15802662,15802989-15803109 26 8.5
>01_06_1201 - 35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 29.9 bits (64), Expect = 0.52
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 38 EKYPHQA---WRFIGYRYRILKHQRAIRCRNEEDGGRNEQIQIRTHEQRKQQFLQE 196
EKYP A RF G+R R+L + + E+G I +E+RK +FL+E
Sbjct: 1213 EKYPVMAELIHRFQGFRERLLADPKFLHRLAIEEGISITTTLIAQYEKRKGRFLEE 1268
>07_01_0886 -
7356591-7356662,7357002-7357079,7357373-7357444,
7357511-7357600,7357669-7357783,7358509-7358639,
7358717-7358992,7360147-7360283,7360368-7360502,
7360958-7361325,7362111-7362229,7362295-7362339
Length = 545
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 21 ADSGLKRNIPIKLGDLSVIDTEFSSIRERLDAEMRKMEEE 140
A S + ++P+ L D S +E S++R DA K EE+
Sbjct: 52 ASSSRRSSVPLPLPDPSSSRSETSAVRSEGDAAEEKSEEQ 91
>09_06_0260 -
21911358-21911438,21911715-21911828,21911911-21912033,
21912342-21912419,21912498-21912647,21913505-21913601,
21913679-21913860,21913899-21913982,21914243-21914303,
21914414-21914506,21914588-21914782,21914937-21915006,
21915536-21915572,21915654-21915737,21915828-21915885,
21916008-21916084,21916185-21916244,21916325-21916687
Length = 668
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +3
Query: 6 ITRKMADSGLKRNIPIKLG-DLSVIDTEFSSIRERLDAEMRKM 131
+ + +A+ G KR +P+ LG D I+ +F++ +E L E+ K+
Sbjct: 219 VDQLLAEQGGKRIVPLGLGDDDQCIEDDFNAWKELLWPELDKL 261
>08_02_0482 - 17643603-17643955,17644024-17646604
Length = 977
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 18 MADSGLKRNIPIKLGDLSVIDT 83
+AD+ L NIP +LGDL V+++
Sbjct: 512 LADNRLTGNIPAELGDLPVLNS 533
>07_03_0943 -
22778877-22780970,22781376-22781480,22781481-22782059,
22782149-22782187,22782340-22782372
Length = 949
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 86 ILKHQRAIRCRNEEDGGRNEQIQIRTH 166
+ K +R + C+NE G RN R H
Sbjct: 629 VAKRRRLVSCKNERTGRRNTAANKRQH 655
>04_04_1184 +
31558678-31558707,31559485-31559644,31559732-31560394,
31560512-31560956,31561090-31561171,31561319-31561534
Length = 531
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +3
Query: 99 RERLDAEMRKMEEEMSKFRSELM 167
+ ++++EM+++EE K RSE M
Sbjct: 449 KAKIESEMKRIEEHAEKLRSEAM 471
>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +3
Query: 33 LKRNIPIKLGDLSVIDTEFSSIRERLDAEMRKMEEEMSKFRSE 161
LK I L + +++ ++ S ++ L + K+EE+M+ +SE
Sbjct: 1535 LKSKYNITLEEKQLLNEKYESAKKELGEAIAKLEEQMNVDKSE 1577
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = +3
Query: 33 LKRNIPIKLGDLSVIDTEFSSIRERLDAEMRKMEEEMSKFRSELM 167
L+ + K +S ++ +RE++ + R++EE SK + E++
Sbjct: 850 LESELEQKQSQVSALEQANEELREKISSLERQLEEARSKLQDEII 894
>06_03_0040 - 15801686-15801993,15802030-15802662,15802989-15803109
Length = 353
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 3 QITRKMADSGLKRNIPIKLGDLSVIDTEFSSIRERLDAEMRK 128
++ K+ D GLKRN+ I LG L F R R E+ K
Sbjct: 243 EVKIKLEDGGLKRNL-ISLGTLHEEGLIFHGNRNRKTIEIMK 283
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,912,715
Number of Sequences: 37544
Number of extensions: 108986
Number of successful extensions: 349
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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