Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10914X
         (333 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.10 
SB_8330| Best HMM Match : Spb1_C (HMM E-Value=5.3)                     29   0.71 
SB_45590| Best HMM Match : Syntaxin (HMM E-Value=0.61)                 29   1.2  
SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_15952| Best HMM Match : TPR_1 (HMM E-Value=5.8e-11)                 29   1.2  
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.2  
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)                    28   2.2  
SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)                 27   5.0  
SB_58035| Best HMM Match : Casein (HMM E-Value=1.9)                    27   5.0  
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_21648| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)                     26   6.6  
SB_21856| Best HMM Match : RVT_1 (HMM E-Value=4.5e-32)                 26   6.6  
SB_12134| Best HMM Match : Toxin_4 (HMM E-Value=1.3)                   26   6.6  
SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)        26   8.8  
SB_16838| Best HMM Match : TolA (HMM E-Value=2)                        26   8.8  
SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_22570| Best HMM Match : Filament (HMM E-Value=0.1)                  26   8.8  

>SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 734

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +3

Query: 75  IDTEFSSIRERLDAEMRKMEEEMSKFRSELMNRESNNFFKXXXXXXXXXQHSDSRQL 245
           ++ E SS+RE +DA  RKM  ++SK   +L  +E+N   +         QHSD+ +L
Sbjct: 255 LEKEISSLREIVDARERKM-VQLSKDNIDL--QETNAILRSQLEQLESMQHSDNAEL 308



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 87  FSSIRERLDAEMRKMEEEMSKFRSELMNRESNN 185
           FS    +LDA  +K +EE+ K ++EL +    N
Sbjct: 448 FSDAIIKLDAYAKKQQEELVKLKAELDDANEKN 480


>SB_8330| Best HMM Match : Spb1_C (HMM E-Value=5.3)
          Length = 230

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = +3

Query: 36  KRNIPIKLGDLSVIDTEFSSIRERLDAEMRKMEEEMSKFRSE 161
           K N  I L DL       SS+RE++ A MRKM+ E  + R+E
Sbjct: 139 KDNDNISLDDLKPFKVP-SSMREKMKAYMRKMKREALRRRAE 179


>SB_45590| Best HMM Match : Syntaxin (HMM E-Value=0.61)
          Length = 315

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 93  SIRERLDAEMRKMEEEMSKFRSELMN 170
           S RE+L+AE  ++  EM + RS++MN
Sbjct: 78  STREKLEAEHTQVNREMVELRSKIMN 103


>SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 901

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 29  WSQEKYPHQAWRFIGYRY-RILKHQRAIRCRNEEDGGRNEQIQI-RTHEQRKQQFLQE 196
           W Q+  PH     +GYRY + +KH    + R       + Q+QI R  E+RKQ  L +
Sbjct: 127 WQQKYGPHYKKLDLGYRYLKRIKHVSFDQIRER----ASAQLQIERERERRKQDLLMK 180


>SB_15952| Best HMM Match : TPR_1 (HMM E-Value=5.8e-11)
          Length = 672

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +3

Query: 12  RKMADSGLKRNIPIKLGDLSVIDTEFSSIRERLDAEMRKMEEEMSKFRSELMNRES 179
           R +   G K+N   K   +S  D+  S++    D+E  K+  E   FR++  NR+S
Sbjct: 46  RSVGSIGKKKNGAAKGKIVSKSDSLRSALSFDFDSETEKIRREYEVFRAQQANRDS 101


>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 93   SIRERLDAEMRKMEEEMSKFRSELMNRESNNF 188
            SIR +LD   ++ME+E+  +R E MNR+   +
Sbjct: 1395 SIRNKLDCLCKEMEDELEVWR-EYMNRKRTKY 1425


>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
          Length = 591

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 18/33 (54%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 99  RERLDAEMRKMEEE-MSKFRSELMNRESNNFFK 194
           RE L AEMRK EEE MS+ R E   R    F K
Sbjct: 175 REALYAEMRKKEEERMSRERKE-RERRQQEFIK 206


>SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)
          Length = 1127

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 56  AWRFIGYRYRILKHQRAIRCRNEEDGGRNEQIQIRTHEQR 175
           +WR +G  + +L+  + I CRN+      EQI +R H  R
Sbjct: 592 SWR-LGTSFFLLEDGKVI-CRNDYGDRDEEQIVLRVHHMR 629


>SB_58035| Best HMM Match : Casein (HMM E-Value=1.9)
          Length = 450

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = +3

Query: 75  IDTEFSSIRERLDAEMRKMEEEMSKFRSELMN 170
           ++ E   +RE++DA  RK +++M++  S+L+N
Sbjct: 412 VEQEVKVLREKMDALSRKHQDQMAEL-SQLLN 442


>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3259

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 45   IPIKLGDLSVIDTEFSSI-RERLDAEMRKMEEEMSKFRSELMNRESNNF 188
            IPI + + S  D    SI ++ +  E+R+  +E SKFR         NF
Sbjct: 1892 IPIHIPEKSFEDDTSDSISKDDIFEELRQWRQEYSKFRHTSAEESIENF 1940


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 36   KRNIPIKLGDLSVIDTEFSSIRERLDAEMRKMEE---EMSKFRSELMNRESNN 185
            K  +P+   D+S  D    ++  +LD  +R  EE    +S  +SE  N ++ N
Sbjct: 2142 KIQLPVNESDISSTDVAMETLEGKLDMIVRHSEELSNSLSAVQSECGNLQAEN 2194


>SB_21648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +3

Query: 108 LDAEMRKMEEEMSKFRSEL 164
           +D  +RK+++E+SKF+ EL
Sbjct: 1   VDKHLRKLDQELSKFKMEL 19


>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
          Length = 808

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +3

Query: 3   QITRKMADSGLKRNIPIKLGDLSVIDTEFSSIRERLDAE 119
           ++ R + DSGL  +  ++     ++DTEFS +++R+ A+
Sbjct: 11  ELIRALLDSGLSGDDLVR-----IVDTEFSRVQDRITAK 44


>SB_21856| Best HMM Match : RVT_1 (HMM E-Value=4.5e-32)
          Length = 583

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 242 ACRARHWDSLNSPLIQ 289
           ACR+R W  L  P+IQ
Sbjct: 448 ACRSRRWQVLEEPIIQ 463


>SB_12134| Best HMM Match : Toxin_4 (HMM E-Value=1.3)
          Length = 210

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 242 ACRARHWDSLNSPLIQ 289
           ACR+R W  L  P+IQ
Sbjct: 75  ACRSRRWQVLEEPIIQ 90


>SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)
          Length = 1211

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 27  SGLKRNIPIKLGDLSVIDTEFSSIRERLDAEMRKMEEEMSKFRSELMNRESNNF 188
           S L+  I  K  +   I+   +  +ERL  +++ +E E+ K +  L +   NN+
Sbjct: 622 SCLRHEINAKEAENRTINETNAREKERLRNQIKTLETEIYKLQEGLKSNSGNNY 675


>SB_16838| Best HMM Match : TolA (HMM E-Value=2)
          Length = 371

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 2   ANNEKNG*QWSQEKYPHQAWRFIGYRYRIL-KHQRAIRCRNEEDGGRNEQIQIRTHEQRK 178
           + N  N  Q  Q+K   Q  R   Y  +   K Q+  + R ++   R +Q Q    +QR+
Sbjct: 28  SRNNSNNVQLQQQKRQQQQKRTYNYDIQQQQKRQQQQQKRQQQKQKRQQQEQKLQQQQRR 87

Query: 179 QQ 184
           QQ
Sbjct: 88  QQ 89


>SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 54  KLGDLSVIDTEFSSIRERLDAEMRKMEEEMSK 149
           ++ D  +++ EF   +ERL  +  K EEE SK
Sbjct: 262 RIKDFLLMEEEFIQNQERLKPQEEKHEEERSK 293


>SB_22570| Best HMM Match : Filament (HMM E-Value=0.1)
          Length = 601

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +3

Query: 36  KRNIPIKLGDLSVIDTEFSSIRERLDAEMRKMEEEMSKFRSEL 164
           K  + +K+  L  I+ E+S   ++    +  +EEE  + ++EL
Sbjct: 302 KAEMELKMAQLKEIENEYSVKADQYKQHIADLEEEKDQLQNEL 344


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,025,162
Number of Sequences: 59808
Number of extensions: 124630
Number of successful extensions: 451
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)