Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10912
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      29   0.69 
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    27   2.1  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   8.5  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   8.5  

>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 283 LLRFRSLCNGMTLEKRYQIHKYIQKKKLKTSEIFGFI 173
           L RFR + N  T+ K Y  +  ++ +K KT  +FG++
Sbjct: 27  LRRFRRISNASTIPKNYLNNSTVENRKYKT--MFGYV 61


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 613 YKSLQQSLLVNSISVLVALYYL 678
           Y +LQ+ + +NSI++L A YY+
Sbjct: 88  YDTLQELMSINSINMLYAFYYM 109


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 341 KKKCTLFMYVLDLTPPFYKRAMKILSENSSYRKVFIA 451
           KK C +  Y LDL     ++ ++ L + ++Y+ V ++
Sbjct: 101 KKGCDVHFYALDLNEAELQKGLQELRQTTNYQHVKVS 137


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 335 DIKKKCTLFMYVLDLTPPFYKRAMKILSENSSYRKVFI 448
           +++ KCT  +Y  + T P Y +  +ILS N S + + +
Sbjct: 780 EMEDKCTAAVYFANSTEPIYPK--RILSANCSSKFIVL 815


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,075,337
Number of Sequences: 5004
Number of extensions: 64561
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)