Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10912
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419...    30   1.7  
02_04_0137 + 20137615-20138223                                         29   3.8  

>09_03_0111 -
           12440818-12441129,12441242-12441585,12441663-12441989,
           12443444-12443602,12443687-12443784,12444745-12444821
          Length = 438

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 600 TNLIL*ESSTKLVG*LYKCISRLVLFGKVSCNHIWLDNNFT 722
           T L +   S + +  L+ C S  +L G V  ++I LDNNF+
Sbjct: 250 TRLRIAHESAEALAYLHSCASPPILHGDVKSSNILLDNNFS 290


>02_04_0137 + 20137615-20138223
          Length = 202

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 110 GLSNFTRTGVRAQSGGKEFANSCSSTSGGD 21
           GL++  R  +R  SGG+   +S SS + GD
Sbjct: 66  GLNSIVRCALRCSSGGRMMMSSSSSAAAGD 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,776,287
Number of Sequences: 37544
Number of extensions: 367179
Number of successful extensions: 629
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)