Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10912
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z81533-2|CAB04342.1|  432|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical
           protein F23F12.13 protein.
          Length = 528

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 195 LRKFSVSFSCS*ILGFYRNRNEGLLLVQRPFQFHQDRCASSVRRKGICQQL 43
           L +F++ F C  I   + N + GL      FQF + +C  S  +  IC +L
Sbjct: 16  LWQFALFFCCQQIFSIFYNFSPGLSCDDPSFQFSKPKCKLS--KSEICSEL 64


>Z81533-2|CAB04342.1|  432|Caenorhabditis elegans Hypothetical
           protein F36G9.3 protein.
          Length = 432

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +3

Query: 138 YSYRILGFSCKRMKPKISE---VFNFFF*IYLCIWYRFSSVIPLHRLLNRNSVNEII 299
           ++ +I+ F C+    K ++   +F FF  +  C  + FSS+I L+ +L   S+  I+
Sbjct: 349 WNTQIMSFLCETYPEKSAQAFAIFKFFESLLSCFTFIFSSLISLYWVLTILSIFSIL 405


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,898,148
Number of Sequences: 27780
Number of extensions: 356865
Number of successful extensions: 780
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)