Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10905
         (729 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q18983 Cluster: Putative uncharacterized protein; n=3; ...    34   3.1  
UniRef50_UPI0000DB6C40 Cluster: PREDICTED: similar to CG7497-PA;...    33   9.5  

>UniRef50_Q18983 Cluster: Putative uncharacterized protein; n=3;
            Caenorhabditis|Rep: Putative uncharacterized protein -
            Caenorhabditis elegans
          Length = 1792

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = -1

Query: 402  TKNSKNSKEIAEQMIGSIPTSGIKWLSGRLILFASYLG---FWYLYMYI*RYNIVYQSRV 232
            TK   ++K   +  +GS PT G       L+  AS L      Y +M + R+N  + S++
Sbjct: 995  TKIDGDTKLFEKGQLGSTPTGGKLTTYQELLTLASDLNQPDLVYKFMQLARHNATWNSKM 1054

Query: 231  SVAHGF 214
              AHGF
Sbjct: 1055 GAAHGF 1060


>UniRef50_UPI0000DB6C40 Cluster: PREDICTED: similar to CG7497-PA;
           n=1; Apis mellifera|Rep: PREDICTED: similar to CG7497-PA
           - Apis mellifera
          Length = 339

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = -3

Query: 319 AINFVC*LSGFLVSIYVYIKV*YCISVSGFCSTRIL 212
           AIN +  L G LV +Y+ I V   IS  GFCS R++
Sbjct: 28  AINDLVALLGMLVQMYITIYVGSVISTRGFCSLRVV 63


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,007,924
Number of Sequences: 1657284
Number of extensions: 10734221
Number of successful extensions: 21299
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21170
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)