Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10905
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    27   2.7  
SPAC22E12.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       27   2.7  

>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 396 NSKNSKEI-AEQMIGSIPTSGIKWLSGRLILFAS 298
           +SKN   I A  ++G  P+S +KWL+ R I  AS
Sbjct: 366 DSKNENLINATSLLGVDPSSLVKWLTKRKIKMAS 399


>SPAC22E12.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 96

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 190 HGHLAPNKESVCYRNPRLIY 249
           HG L PN E++ YR+ R+++
Sbjct: 15  HGELNPNNEAMFYRSSRILH 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,793
Number of Sequences: 5004
Number of extensions: 48829
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)