Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10905
         (729 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6762| Best HMM Match : SNF (HMM E-Value=0)                          29   5.1  
SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  
SB_39037| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_6762| Best HMM Match : SNF (HMM E-Value=0)
          Length = 507

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -2

Query: 308 CLLVIWVFGIYICIYKGI 255
           CL++ WV G+Y C++KG+
Sbjct: 208 CLILAWV-GVYFCMWKGV 224


>SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -1

Query: 345  TSGIKWLSGRLILFASYLGFWYLYMYI*RYNIVYQSRVS 229
            T G+ +L    +++A  L FWYL  Y+ R   VYQ R S
Sbjct: 1073 TFGLTYLVVITLMYA--LSFWYLGKYVRRQVTVYQRRDS 1109


>SB_39037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 125 CG*VRVYCYNYNNSTFSKNNTHMVTWPQT 211
           CG  +VYC NYNN  F+ N+    T+  T
Sbjct: 98  CG--KVYCSNYNNGKFTGNHYCNYTYNAT 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,882,443
Number of Sequences: 59808
Number of extensions: 348438
Number of successful extensions: 649
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)