Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10905
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr...    34   0.091
U80439-4|AAB37641.2|  274|Caenorhabditis elegans Dnaj domain (pr...    28   5.9  

>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical protein
            D2045.2 protein.
          Length = 1792

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = -1

Query: 402  TKNSKNSKEIAEQMIGSIPTSGIKWLSGRLILFASYLG---FWYLYMYI*RYNIVYQSRV 232
            TK   ++K   +  +GS PT G       L+  AS L      Y +M + R+N  + S++
Sbjct: 995  TKIDGDTKLFEKGQLGSTPTGGKLTTYQELLTLASDLNQPDLVYKFMQLARHNATWNSKM 1054

Query: 231  SVAHGF 214
              AHGF
Sbjct: 1055 GAAHGF 1060


>U80439-4|AAB37641.2|  274|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 4 protein.
          Length = 274

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -1

Query: 396 NSKNSKEIAEQMIGSIPTSGIKWLSGRLILFASYLGFWYLYMYI*RYN 253
           NS++S+E  ++       S +KW +  L+L A Y G    Y+Y+  YN
Sbjct: 131 NSRSSREERDKSSREFMKSIVKWTAIGLVLVAGYNGG---YLYLLAYN 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,347,326
Number of Sequences: 27780
Number of extensions: 266183
Number of successful extensions: 434
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)