Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10905
         (729 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00800.1 68417.m00110 expressed protein contains 1 WD-40 repe...    30   1.4  
At5g22340.1 68418.m02606 expressed protein                             28   5.5  
At4g11770.1 68417.m01876 kelch repeat-containing F-box family pr...    28   7.3  

>At4g00800.1 68417.m00110 expressed protein contains 1 WD-40 repeat
           (PF00400); 42% similarity to fimbriae-associated protein
           Fap1 (gi:3929312) [Streptococcus parasanguinis]
          Length = 994

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/66 (30%), Positives = 37/66 (56%)
 Frame = -1

Query: 420 VQVCYITKNSKNSKEIAEQMIGSIPTSGIKWLSGRLILFASYLGFWYLYMYI*RYNIVYQ 241
           VQV  + K+  + KE A+  + S P  G+ WL  +L++  +  G  +LY++     +++Q
Sbjct: 709 VQVAKLVKS--DIKEYAKWSLDS-PAIGVVWLDDQLLVIPTVTG--HLYLFTRDGVVIHQ 763

Query: 240 SRVSVA 223
           +  SVA
Sbjct: 764 TNFSVA 769


>At5g22340.1 68418.m02606 expressed protein 
          Length = 323

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
 Frame = -1

Query: 408 YITKNSKN----SKEIAEQMIGSIPTSGIKWLSGRLILFASYLGFWYLYMYI*RYNIVYQ 241
           ++ K SK     S+++ + ++ +I  SG+   S RL++ A+  G W L     + ++   
Sbjct: 229 FLKKKSKKIGIRSEDLEDFVVRTIRGSGMALSSPRLVIPAAIYGLWILSHKYFQNDLFDF 288

Query: 240 SRVSVAHGFFVWGQVTMCVLFFEN 169
             V    G FV+   T+  ++ +N
Sbjct: 289 QIVPAMVGLFVYKAATLVQVYRDN 312


>At4g11770.1 68417.m01876 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 396

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 22/54 (40%), Positives = 30/54 (55%)
 Frame = -1

Query: 393 SKNSKEIAEQMIGSIPTSGIKWLSGRLILFASYLGFWYLYMYI*RYNIVYQSRV 232
           SK  K+++E ++ SIPTS    LSG   L  + +G  Y+YM     N V  SRV
Sbjct: 118 SKEEKKLSENLMVSIPTSNDCPLSG---LTCNTIGS-YIYMIGGYINGVLSSRV 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,969,894
Number of Sequences: 28952
Number of extensions: 230499
Number of successful extensions: 396
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)