BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV10904 (820 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.20 SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 27 2.4 SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.2 SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 27 4.2 SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 26 5.6 SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 26 5.6 SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 26 7.4 SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 25 9.8 SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 25 9.8 SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 25 9.8 SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces... 25 9.8 >SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 1036 Score = 31.1 bits (67), Expect = 0.20 Identities = 23/77 (29%), Positives = 35/77 (45%) Frame = +2 Query: 500 TIRANALRTQSAQDLITLEPTEVESSTLAKFVRSVSQQKQISCSDSDPTGQEINSIPIKT 679 TI N T + DL T++PT S+ L+ ++VS S SD D +S T Sbjct: 943 TITGNV--TITTGDLTTIDPTTFTSTYLSSGFQTVSNTTATSGSDDDVKTASTSSSTSYT 1000 Query: 680 ESDSLTSLVEKSIKTRA 730 S S +S + ++A Sbjct: 1001 SSSSSSSSTTSAASSKA 1017 >SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces pombe|chr 3|||Manual Length = 639 Score = 27.5 bits (58), Expect = 2.4 Identities = 19/74 (25%), Positives = 34/74 (45%) Frame = +3 Query: 240 FHTP*VIDSPSTVEVHDKNYVDDIIKSETIINQDIITVKFTPVPPEFDSQMISPQLAKRS 419 FHT +PS+ E + V DI+ + + T+ P ++M++ +L +R Sbjct: 172 FHT---FHNPSSDEALINSRVQDIVNGLFSVIVTLGTIPIIRCPQGSAAEMVAQKLNQRL 228 Query: 420 KTPIQYLKDDFVDL 461 K + KD FV + Sbjct: 229 KDHLMNTKDAFVSV 242 >SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 101 Score = 27.1 bits (57), Expect = 3.2 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%) Frame = -3 Query: 353 DRYYVLIYYS-FGFYYIVDVIFVVHLNS 273 ++Y + ++ S F F YIV+ F++HLN+ Sbjct: 69 EKYNISLFDSTFVFGYIVNCFFIIHLNT 96 >SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |Schizosaccharomyces pombe|chr 1|||Manual Length = 672 Score = 26.6 bits (56), Expect = 4.2 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%) Frame = +3 Query: 366 VPPE-FDSQMISPQLAKRSKTPIQYL 440 +PP + +ISPQ +RS+TPI+ L Sbjct: 526 IPPSPLQNTVISPQPTRRSRTPIRSL 551 >SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |Schizosaccharomyces pombe|chr 1|||Manual Length = 791 Score = 26.2 bits (55), Expect = 5.6 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Frame = +3 Query: 291 KNYVDDIIKSET---IINQDIITVKFTPVPPEFDSQMISPQLAKRSKTPIQYLKD 446 K ++D+ + + I ++D +K PEF + + Q KTP+Q KD Sbjct: 435 KTQIEDLEEDQNKSKIASKDGTNLKEINSVPEFSDENVINQTGPAKKTPVQRRKD 489 >SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces pombe|chr 2|||Manual Length = 760 Score = 26.2 bits (55), Expect = 5.6 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = +3 Query: 267 PSTVEVHDKNYVDDIIKSETIINQDIITVKFTPVPPE 377 P TVE++ +N V D+I + + + I + PPE Sbjct: 113 PPTVEINYRNEVLDVIMQQRVQRNENIDPEHKGFPPE 149 >SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosaccharomyces pombe|chr 2|||Manual Length = 948 Score = 25.8 bits (54), Expect = 7.4 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +3 Query: 240 FHTP*VIDSPSTVEVHDKNYVDDIIKSETIINQDIITVKFT 362 +HTP I SP+T D Y D+I S ++ + I V T Sbjct: 186 YHTP--IASPTTSSNSDNEYTVDVITSSSLSSFVITNVDST 224 >SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|Schizosaccharomyces pombe|chr 2|||Manual Length = 972 Score = 25.4 bits (53), Expect = 9.8 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +2 Query: 47 DTVYSTTTFRPVSPLPITPPGSARRRHR 130 D STTT P SP P+ + RRR R Sbjct: 78 DNNISTTTLAPPSPSPLRLNEAPRRRGR 105 >SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr 1|||Manual Length = 708 Score = 25.4 bits (53), Expect = 9.8 Identities = 13/49 (26%), Positives = 24/49 (48%) Frame = +2 Query: 554 EPTEVESSTLAKFVRSVSQQKQISCSDSDPTGQEINSIPIKTESDSLTS 700 E ++ + +F++ S K S++ P +NS + E+DSL S Sbjct: 159 EHAKLSDLSYEEFLKKYSSTKVERVSEAAPPPSSLNSSTVLDENDSLIS 207 >SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosaccharomyces pombe|chr 3|||Manual Length = 574 Score = 25.4 bits (53), Expect = 9.8 Identities = 11/41 (26%), Positives = 20/41 (48%) Frame = +2 Query: 14 VKSPIKIIYNSDTVYSTTTFRPVSPLPITPPGSARRRHREL 136 ++ P+ +Y++ Y T +P +P PP A HR + Sbjct: 534 LEDPMSTLYDTSR-YPTRNSKPATPKASRPPSIASTVHRRM 573 >SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces pombe|chr 1|||Manual Length = 354 Score = 25.4 bits (53), Expect = 9.8 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 7/74 (9%) Frame = +2 Query: 482 FFM*RKTIRANALRTQSAQDLITLEPTEVE------SSTLAKFVRSVSQQKQ-ISCSDSD 640 F+ K A L S DL+TL+ TE+E S L + + +S Q + CS S Sbjct: 10 FYFDEKIASAFELGEVSTVDLLTLDITELERRTHCSQSELLQLIEQISLLLQPVRCSASK 69 Query: 641 PTGQEINSIPIKTE 682 T + + + +K + Sbjct: 70 VTSKYLTTGDVKLD 83 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,261,303 Number of Sequences: 5004 Number of extensions: 66765 Number of successful extensions: 226 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 216 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 226 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 400438000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -