Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10904
(820 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.20
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 27 2.4
SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.2
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 27 4.2
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 26 5.6
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 26 5.6
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 26 7.4
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 25 9.8
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 25 9.8
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 25 9.8
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces... 25 9.8
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.1 bits (67), Expect = 0.20
Identities = 23/77 (29%), Positives = 35/77 (45%)
Frame = +2
Query: 500 TIRANALRTQSAQDLITLEPTEVESSTLAKFVRSVSQQKQISCSDSDPTGQEINSIPIKT 679
TI N T + DL T++PT S+ L+ ++VS S SD D +S T
Sbjct: 943 TITGNV--TITTGDLTTIDPTTFTSTYLSSGFQTVSNTTATSGSDDDVKTASTSSSTSYT 1000
Query: 680 ESDSLTSLVEKSIKTRA 730
S S +S + ++A
Sbjct: 1001 SSSSSSSSTTSAASSKA 1017
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = +3
Query: 240 FHTP*VIDSPSTVEVHDKNYVDDIIKSETIINQDIITVKFTPVPPEFDSQMISPQLAKRS 419
FHT +PS+ E + V DI+ + + T+ P ++M++ +L +R
Sbjct: 172 FHT---FHNPSSDEALINSRVQDIVNGLFSVIVTLGTIPIIRCPQGSAAEMVAQKLNQRL 228
Query: 420 KTPIQYLKDDFVDL 461
K + KD FV +
Sbjct: 229 KDHLMNTKDAFVSV 242
>SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -3
Query: 353 DRYYVLIYYS-FGFYYIVDVIFVVHLNS 273
++Y + ++ S F F YIV+ F++HLN+
Sbjct: 69 EKYNISLFDSTFVFGYIVNCFFIIHLNT 96
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 366 VPPE-FDSQMISPQLAKRSKTPIQYL 440
+PP + +ISPQ +RS+TPI+ L
Sbjct: 526 IPPSPLQNTVISPQPTRRSRTPIRSL 551
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +3
Query: 291 KNYVDDIIKSET---IINQDIITVKFTPVPPEFDSQMISPQLAKRSKTPIQYLKD 446
K ++D+ + + I ++D +K PEF + + Q KTP+Q KD
Sbjct: 435 KTQIEDLEEDQNKSKIASKDGTNLKEINSVPEFSDENVINQTGPAKKTPVQRRKD 489
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 267 PSTVEVHDKNYVDDIIKSETIINQDIITVKFTPVPPE 377
P TVE++ +N V D+I + + + I + PPE
Sbjct: 113 PPTVEINYRNEVLDVIMQQRVQRNENIDPEHKGFPPE 149
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 240 FHTP*VIDSPSTVEVHDKNYVDDIIKSETIINQDIITVKFT 362
+HTP I SP+T D Y D+I S ++ + I V T
Sbjct: 186 YHTP--IASPTTSSNSDNEYTVDVITSSSLSSFVITNVDST 224
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 47 DTVYSTTTFRPVSPLPITPPGSARRRHR 130
D STTT P SP P+ + RRR R
Sbjct: 78 DNNISTTTLAPPSPSPLRLNEAPRRRGR 105
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 554 EPTEVESSTLAKFVRSVSQQKQISCSDSDPTGQEINSIPIKTESDSLTS 700
E ++ + +F++ S K S++ P +NS + E+DSL S
Sbjct: 159 EHAKLSDLSYEEFLKKYSSTKVERVSEAAPPPSSLNSSTVLDENDSLIS 207
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +2
Query: 14 VKSPIKIIYNSDTVYSTTTFRPVSPLPITPPGSARRRHREL 136
++ P+ +Y++ Y T +P +P PP A HR +
Sbjct: 534 LEDPMSTLYDTSR-YPTRNSKPATPKASRPPSIASTVHRRM 573
>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 9.8
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Frame = +2
Query: 482 FFM*RKTIRANALRTQSAQDLITLEPTEVE------SSTLAKFVRSVSQQKQ-ISCSDSD 640
F+ K A L S DL+TL+ TE+E S L + + +S Q + CS S
Sbjct: 10 FYFDEKIASAFELGEVSTVDLLTLDITELERRTHCSQSELLQLIEQISLLLQPVRCSASK 69
Query: 641 PTGQEINSIPIKTE 682
T + + + +K +
Sbjct: 70 VTSKYLTTGDVKLD 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,261,303
Number of Sequences: 5004
Number of extensions: 66765
Number of successful extensions: 226
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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