Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10904
(820 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1501 + 37804029-37804600,37804626-37805388 30 1.9
04_03_0996 + 21533874-21534469,21534963-21535041 30 2.5
05_07_0219 - 28474661-28475146,28475979-28476644 29 4.4
03_01_0131 - 1013982-1016246 27 5.0
05_07_0279 + 28917281-28917400,28917535-28917617,28918171-289183... 29 5.9
03_02_0831 + 11620831-11620883,11621002-11621106,11621399-11621873 29 5.9
11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525... 28 7.8
09_04_0160 + 15226762-15227032,15227138-15227373,15227469-152275... 28 7.8
06_03_0415 + 20558333-20558635,20558894-20558917 28 7.8
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 28 7.8
01_01_0780 - 6036454-6037992 28 7.8
>01_06_1501 + 37804029-37804600,37804626-37805388
Length = 444
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/74 (29%), Positives = 36/74 (48%)
Frame = +1
Query: 64 YYFSSGFAVANHAAGVGTPSPQRTRKLETPLHFDGGLFSDIRSTDGKLLSKVTVDRVQRS 243
++ S G+A++N A S RTR + L DGG+ + + G + + T R +R
Sbjct: 91 FFNSCGYAISNSALSYVEDSVSRTR-VRRVLGHDGGVPPRLLARHGDVPRRAT--RPRRR 147
Query: 244 THHESSTPRVLLRC 285
H ++ VLL C
Sbjct: 148 RHPRAARRVVLLGC 161
>04_03_0996 + 21533874-21534469,21534963-21535041
Length = 224
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 44 SDTVYSTTTFRPVSPLPITPPGSARRRHRELGSWKHPSTS 163
+D + P LP PP +ARRR R L + +PS S
Sbjct: 3 TDAAAAAAASSPSPLLPPAPPSAARRRRRRLLTSPNPSVS 42
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 29.1 bits (62), Expect = 4.4
Identities = 22/71 (30%), Positives = 30/71 (42%)
Frame = +2
Query: 5 HTPVKSPIKIIYNSDTVYSTTTFRPVSPLPITPPGSARRRHRELGSWKHPSTSMEDCFPT 184
H P SP +S T +T T P SP P PP SA W P + E+
Sbjct: 87 HPPPPSPATS--SSRTATATATATPTSPTPTPPPTSATL------LWPRPRPTKEEEGEG 138
Query: 185 YEVQTESYLAK 217
+ +T++ L K
Sbjct: 139 LQRRTDAVLVK 149
>03_01_0131 - 1013982-1016246
Length = 754
Score = 26.6 bits (56), Expect(2) = 5.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -3
Query: 215 LLSNFPSVLRMSENSPPSKWRGVSNFLVLCGDG 117
+L + PS PP KW+G F + G G
Sbjct: 149 ILPSHPSFGDAGMPPPPKKWKGTCEFKAISGGG 181
Score = 20.6 bits (41), Expect(2) = 5.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 392 HLGIEFRWDRSEFDRYYVL 336
HLG + W RS F R V+
Sbjct: 124 HLGNDGFWSRSGFGRGVVI 142
>05_07_0279 +
28917281-28917400,28917535-28917617,28918171-28918321,
28918415-28918514,28918777-28918849,28918968-28919023,
28919170-28919258,28919426-28919581
Length = 275
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 641 PTGQEINSIPIKTESDSLTSLVE-KSIKTRAVS 736
P G+EI +P+ T+S T ++ KS KTR S
Sbjct: 241 PRGREIQKVPVSTKSMLATLFIKHKSAKTRKAS 273
>03_02_0831 + 11620831-11620883,11621002-11621106,11621399-11621873
Length = 210
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 258 IDSPSTVEVHDKNYVDDIIKSETIINQDIITVKFTPV-PPEFDSQMIS 398
++ P+T ++ K+Y D + S T N+ F P+ P EF Q S
Sbjct: 64 MNCPATKQIQQKDYSDPPLYSVTYYNEHTCNSAFLPLSPSEFQLQTAS 111
>11_06_0388 +
23048576-23051546,23051830-23052371,23052444-23052517,
23053006-23053090,23053281-23053367,23053585-23053657,
23053882-23053925,23054041-23054169,23054301-23054402,
23054529-23054585
Length = 1387
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +2
Query: 539 DLITLEPTEVESSTLAKFVRSVSQQKQISCSDSDPTGQEINSIPIKTESDSLTSLVEKSI 718
D IT EP + +S + +K IS D ++I S PI+T+S+ + S +
Sbjct: 316 DKITSEPIDTQSEKIISEPIETQSEKIIS-EPIDTQSEKIISEPIETQSEKIISEPIDAQ 374
Query: 719 KTRAVSE 739
+ +SE
Sbjct: 375 SEKIISE 381
>09_04_0160 +
15226762-15227032,15227138-15227373,15227469-15227565,
15227657-15227783,15227870-15228482,15228572-15228835,
15228918-15229130,15229253-15229460,15229552-15229748,
15229830-15230183,15230287-15230874
Length = 1055
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +2
Query: 56 YSTTTFRPVSPLPITPPGSARRRHRELGSWK 148
+S++ + + P P++ PGSA+ ++ SWK
Sbjct: 185 FSSSLHKRIHPYPVSEPGSAKWDEKKEVSWK 215
>06_03_0415 + 20558333-20558635,20558894-20558917
Length = 108
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +2
Query: 38 YNSDTVYSTTTFRP-VSPLPITPPGSARRRHRELGSWK 148
Y+ ++S RP V L TP G RRRH WK
Sbjct: 61 YDQSGLWSPLVLRPEVLLLAQTPAGRRRRRHHHRRRWK 98
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 97 HAAGVGTPSPQRTRKLETPLHFDGGLFSDIRSTD 198
H + + TPSPQ LETP+ D S+I TD
Sbjct: 846 HTSLIPTPSPQLGSGLETPIQID----SEIEGTD 875
>01_01_0780 - 6036454-6037992
Length = 512
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 52 CLLDYYFSSGFAVANHAAGVGTPSPQRTRKLET 150
CL+DY + AA G P P T +ET
Sbjct: 270 CLVDYLMQETVREIDEAAAAGLPPPPHTSDMET 302
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,715,825
Number of Sequences: 37544
Number of extensions: 415635
Number of successful extensions: 1473
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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