Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10904
         (820 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35417| Best HMM Match : DTHCT (HMM E-Value=1.7)                     29   4.5  
SB_6205| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  

>SB_35417| Best HMM Match : DTHCT (HMM E-Value=1.7)
          Length = 357

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 524 TQSAQDLI-TLEPTEVESSTLAKFVRSVSQQKQISCSDSDPTGQEINSIPIKTESDSL 694
           T   QDL+ T E  +   STL K V+   ++K     +  PT QEI+++     +DSL
Sbjct: 97  TSDRQDLMATKEAPKNWRSTLQKQVQVRKEKKNWEIEEKLPTVQEISALLTSDHADSL 154


>SB_6205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 602 VSQQKQISCSDSDPTGQEINSIPIKTESDSLTSLVEKSIKTRAVSENRE 748
           + QQKQI C  +D +  +     + TES S+  L  + I  + +  NR+
Sbjct: 81  IEQQKQIICLSADLSSTQEKVEQLPTESYSVNDLKSEIISLKGLLLNRK 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,967,576
Number of Sequences: 59808
Number of extensions: 478464
Number of successful extensions: 1436
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)