Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10904
         (820 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ009660-1|AAY26234.1| 1836|Homo sapiens expressed in synovial l...    36   0.13 
BC146783-1|AAI46784.1| 1773|Homo sapiens FNDC1 protein protein.        36   0.13 
AB058769-1|BAB47495.2| 1783|Homo sapiens KIAA1866 protein protein.     36   0.13 
AL590551-1|CAH71650.1|  600|Homo sapiens fibronectin type III do...    35   0.31 
AJ606308-1|CAE54436.1| 4262|Homo sapiens secreted mucin MUC17 pr...    31   6.6  
AJ606307-1|CAE54435.1| 4493|Homo sapiens membrane mucin MUC17 pr...    31   6.6  

>DQ009660-1|AAY26234.1| 1836|Homo sapiens expressed in synovial lining
            protein protein.
          Length = 1836

 Score = 36.3 bits (80), Expect = 0.13
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 2    KHTPVKSPIKIIYNSDTVYSTTTFRPVSPLPITPPGSARRRHRELGSWKHPSTSMEDCF 178
            + T  + P   +  +    +TTT +P +P+P  PPG+   RH + G+    S  + +C+
Sbjct: 1422 RRTTTRRPTTTVRTTTRTTTTTTPKPTTPIPTCPPGTL-ERHDDDGNLIMSSNGIPECY 1479


>BC146783-1|AAI46784.1| 1773|Homo sapiens FNDC1 protein protein.
          Length = 1773

 Score = 36.3 bits (80), Expect = 0.13
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 2    KHTPVKSPIKIIYNSDTVYSTTTFRPVSPLPITPPGSARRRHRELGSWKHPSTSMEDCF 178
            + T  + P   +  +    +TTT +P +P+P  PPG+   RH + G+    S  + +C+
Sbjct: 1359 RRTTTRRPTTTVRTTTRTTTTTTPKPTTPIPTCPPGTL-ERHDDDGNLIMSSNGIPECY 1416


>AB058769-1|BAB47495.2| 1783|Homo sapiens KIAA1866 protein protein.
          Length = 1783

 Score = 36.3 bits (80), Expect = 0.13
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 2    KHTPVKSPIKIIYNSDTVYSTTTFRPVSPLPITPPGSARRRHRELGSWKHPSTSMEDCF 178
            + T  + P   +  +    +TTT +P +P+P  PPG+   RH + G+    S  + +C+
Sbjct: 1369 RRTTTRRPTTTVRTTTRTTTTTTPKPTTPIPTCPPGTL-ERHDDDGNLIMSSNGIPECY 1426


>AL590551-1|CAH71650.1|  600|Homo sapiens fibronectin type III
           domain containing 1 protein.
          Length = 600

 Score = 35.1 bits (77), Expect = 0.31
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +2

Query: 2   KHTPVKSPIKIIYNSDTVYSTTTFRPVSPLPITPPGSARRRHRELGSWKHPSTSMEDCF 178
           + T  + P   +  +    +TTT  P +P+P  PPG+   RH + G+    S  + +C+
Sbjct: 186 RRTTTRRPTTTVRTTTRTTTTTTPTPTTPIPTCPPGTL-ERHDDDGNLIMSSNGIPECY 243


>AJ606308-1|CAE54436.1| 4262|Homo sapiens secreted mucin MUC17
           protein.
          Length = 4262

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 569 ESSTLAKF-VRSVSQQKQISCSDSDPTGQEINSIPIKTESDSLTSLVEKSIKTRAVSEN 742
           E+S L+   V S +Q    + + S P   E+NS+P  T S+  T L   S+ T  V+ +
Sbjct: 468 EASNLSTTPVDSKTQVTTSTEASSSPPTAEVNSMPTSTPSEGSTPLTSMSVSTMPVASS 526


>AJ606307-1|CAE54435.1| 4493|Homo sapiens membrane mucin MUC17
           protein.
          Length = 4493

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 569 ESSTLAKF-VRSVSQQKQISCSDSDPTGQEINSIPIKTESDSLTSLVEKSIKTRAVSEN 742
           E+S L+   V S +Q    + + S P   E+NS+P  T S+  T L   S+ T  V+ +
Sbjct: 468 EASNLSTTPVDSKTQVTTSTEASSSPPTAEVNSMPTSTPSEGSTPLTSMSVSTMPVASS 526


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,883,569
Number of Sequences: 237096
Number of extensions: 2282673
Number of successful extensions: 9233
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9233
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10203625794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)