Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10904
         (820 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60150.1 68418.m07540 expressed protein ; expression supporte...    30   2.1  
At3g63140.1 68416.m07091 mRNA-binding protein, putative similar ...    29   2.8  
At1g10760.1 68414.m01231 starch excess protein (SEX1) identical ...    29   4.9  
At5g52310.1 68418.m06492 low-temperature-responsive protein 78 (...    28   6.5  
At5g57830.1 68418.m07232 expressed protein contains Pfam profile...    28   8.6  
At4g37750.1 68417.m05344 ovule development protein aintegumenta ...    28   8.6  
At3g58650.1 68416.m06537 expressed protein                             28   8.6  
At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot...    28   8.6  

>At5g60150.1 68418.m07540 expressed protein ; expression supported
           by MPSS
          Length = 1195

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +2

Query: 518 LRTQSAQDLITLEPTEVESSTLAKFVRSVSQ-QKQISCSDSDPTGQEINSIPIKTESDSL 694
           LR  S +  +T+E   +ESS      +S S+ QKQ +CS S+ T  ++N   +  ++D L
Sbjct: 813 LRPSSVE--VTMEIKPLESSHEPFSEKSTSEKQKQYNCSSSENT-SDVNDGCVMKQADQL 869

Query: 695 TSLV 706
            +LV
Sbjct: 870 GTLV 873


>At3g63140.1 68416.m07091 mRNA-binding protein, putative similar to
           mRNA binding protein precursor (GI:26453355)
           [Lycopersicon esculentum]
          Length = 406

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 46  GHCLLDYYFSSGFAVANHAAGVGTPSPQRTRKLETPLHFDGGLFSDIRSTDGK 204
           GH ++ +YF+     A HA  + T   + + K++ P       FS+I S  GK
Sbjct: 91  GHAVIGFYFAKELLSAGHAVTILTVGDESSEKMKKP---PFNRFSEIVSGGGK 140


>At1g10760.1 68414.m01231 starch excess protein (SEX1) identical to
            SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA
            gi|12044357|gb|AF312027.1|AF312027
          Length = 1399

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 160  FDGGLFSDIRSTDGKLLS 213
            FD G+ SD++  DGKLLS
Sbjct: 1020 FDSGILSDLQGKDGKLLS 1037


>At5g52310.1 68418.m06492 low-temperature-responsive protein 78
           (LTI78) / desiccation-responsive protein 29A (RD29A)
          Length = 710

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 208 LSKVTVDRVQRSTHHES-STPRVLLRCTTKITST 306
           LS+++     R THHES +TP  LL  T  +TST
Sbjct: 152 LSELSDREESRETHHESLNTPVSLLSGTEDVTST 185


>At5g57830.1 68418.m07232 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 387

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 188 EVQTESYLAK*QSIGCSVPHTMSHRLPE 271
           E Q ++Y  K  S+GCS P  + ++ PE
Sbjct: 105 EFQVQAYRCKLLSLGCSDPAVIENKFPE 132


>At4g37750.1 68417.m05344 ovule development protein aintegumenta
           (ANT) identical to ovule development protein
           aintegumenta (ANT) (GI:1244708) ) [Arabidopsis thaliana]
          Length = 555

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +1

Query: 163 DGGLFSDIR----STDGKLLSKVTVDRVQRSTHHESSTPRV 273
           +GG++S +      +DG L     ++R   S HH+ S+P+V
Sbjct: 76  NGGIYSHMSVMPLRSDGSLCLMEALNRSSHSNHHQDSSPKV 116


>At3g58650.1 68416.m06537 expressed protein
          Length = 723

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 22/65 (33%), Positives = 28/65 (43%)
 Frame = +2

Query: 524 TQSAQDLITLEPTEVESSTLAKFVRSVSQQKQISCSDSDPTGQEINSIPIKTESDSLTSL 703
           TQS+ D +  E   V   T   F  S   QKQ      +   QE++SI   TE+D     
Sbjct: 455 TQSSLDRVLTESESVSDCT--SFFNSQKVQKQKVIQGEE---QEVSSITTLTEADDFALS 509

Query: 704 VEKSI 718
             KSI
Sbjct: 510 CSKSI 514


>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 protein,
            Xenopus laevis, PIR:T30335
          Length = 1229

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
 Frame = +2

Query: 512  NALRTQSAQDLITL--EPTEVESSTLAKFVRSVSQQKQISCSDSDPTGQEINSIPIKTES 685
            N LRT  A DL+    E T+++S       +  S +K++     D T +   S+ ++ E 
Sbjct: 1049 NILRTGKATDLLKSQEEKTKLQSEMKLSREKLASVRKEVD----DMTKK---SLKLEKEI 1101

Query: 686  DSLTSLVEKSIKTRAVSE 739
             ++ + +EKS KTR  SE
Sbjct: 1102 KTMETEIEKSSKTRTESE 1119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,936,739
Number of Sequences: 28952
Number of extensions: 347381
Number of successful extensions: 1076
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)