Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10893
(446 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 28 0.57
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 26 2.3
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 26 3.0
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 25 4.0
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ... 25 5.3
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 5.3
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 7.0
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce... 25 7.0
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 25 7.0
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual 24 9.3
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo... 24 9.3
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 28.3 bits (60), Expect = 0.57
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 143 ILQHRRPRLPLMQLEAPCSFNFCSLRA 63
I Q LP + L +PCSF CSLRA
Sbjct: 48 IAQKSNISLPFLTL-SPCSFTICSLRA 73
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 2.3
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 145 WHW-GSVDSISGSRARFQLSGNSGRKHSRCCTSILRKL 255
W W GSVD SG N R S TS+LR++
Sbjct: 39 WKWYGSVDEDSGYVYLTSKDSNEARSGSLWSTSVLRQV 76
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 25.8 bits (54), Expect = 3.0
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = -2
Query: 418 IDKFIKNLNAF*FQIKQKRSDPGA-MSRTGDV*HHLMAWGLPWQQQSTVTQCCRPLISVV 242
++ F K+ N F + + P A + ++G + + +PW + + C + + +
Sbjct: 205 VNSFSKSANGFSHNLNRYDISPAAFILKSGSPSLQIHSVEIPWVEPLALADCIQKSGNPI 264
Query: 241 CLCSSGCASCRYS 203
C S RYS
Sbjct: 265 CFLDSAKKPGRYS 277
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.4 bits (53), Expect = 4.0
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = -1
Query: 230 QRLCFLPLFPLS*NRAREPLMESTDPQCHILQHRRPRLPLMQLEAP 93
+++ FL L PLS ++ + ++P+ +QH++ L ++L P
Sbjct: 135 RKMQFLSLEPLSLLLLKDSFINKSNPEYESMQHQQILLKKLKLHFP 180
>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 25.0 bits (52), Expect = 5.3
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 170 MESTDPQCHILQHRRPRLPLMQLEAPCSF 84
M+S Q ++L RP LPL P F
Sbjct: 88 MDSLSHQIYLLHKNRPTLPLKPTNQPTRF 116
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.0 bits (52), Expect = 5.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 327 TSPVLDIAPGSDLFCFIWN*NA 392
T P+ + P ++FC IW+ NA
Sbjct: 411 THPLRSVIPLDNIFCNIWSDNA 432
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 24.6 bits (51), Expect = 7.0
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2
Query: 2 WCRIRHQNFL 31
WCRIRH+ FL
Sbjct: 309 WCRIRHKAFL 318
>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 24.6 bits (51), Expect = 7.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 427 LHRIDKFIKNLNAF*FQIKQKRSDPGAMSRTG 332
LH+I KF +L + + +++ AMSR G
Sbjct: 119 LHQIKKFSSDLQSLKSSMGERQKQQAAMSRRG 150
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 24.6 bits (51), Expect = 7.0
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = +1
Query: 76 QKLKEHGASSCISGKRGRRCCNIWHWGS 159
Q E A +C G G C +W+W +
Sbjct: 394 QSSAEAAALACSGGSDGVTCGYMWYWNN 421
>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 24.2 bits (50), Expect = 9.3
Identities = 6/19 (31%), Positives = 11/19 (57%)
Frame = -2
Query: 322 HHLMAWGLPWQQQSTVTQC 266
H ++ WG W++ T +C
Sbjct: 160 HGVIGWGATWEKSKTQMEC 178
>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 24.2 bits (50), Expect = 9.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 213 QEAQPLLHKHTTEISGRQHCVTVDCCCHG 299
QE ++ KHT I+ +Q V C HG
Sbjct: 262 QEFGNIIEKHTNSITEKQISVVRTYCGHG 290
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,714,176
Number of Sequences: 5004
Number of extensions: 30695
Number of successful extensions: 69
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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