Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10893
         (446 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15840.1 68417.m02409 expressed protein                             30   0.62 
At5g07790.1 68418.m00892 expressed protein                             29   1.1  
At4g03610.1 68417.m00496 phosphonate metabolism protein-related ...    29   1.4  
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    27   4.4  
At1g68430.1 68414.m07817 expressed protein                             27   4.4  
At4g16141.1 68417.m02446 expressed protein contains 1 predicted ...    27   5.8  

>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 169 ISGSRARFQLSGNSGRKHSRCCTSILRKLVAGSIVS 276
           +SGS   FQ S NS     R CTS++ K   GS+V+
Sbjct: 115 VSGSNLVFQQSSNSQTNFGRPCTSVVDK-TEGSVVA 149


>At5g07790.1 68418.m00892 expressed protein
          Length = 616

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +1

Query: 100 SSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKLVAGSIVSQ 279
           S  +  KR RR   +   G+   +S + A   +S  SGR+ + C TS+ + L+  + +S 
Sbjct: 411 SGRVKRKRSRRISLVAE-GNYQQVSAAEAIVDISRKSGRETAACITSLSKNLLWFADISS 469

Query: 280 LTA 288
             A
Sbjct: 470 SVA 472


>At4g03610.1 68417.m00496 phosphonate metabolism protein-related
           weak similarity to PhnP protein. (Swiss-Prot:P16692)
           [Escherichia coli]
          Length = 290

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = -1

Query: 173 LMESTDPQCHILQHRRPRLPLMQLEAPCS----FNFCSLRAIRRYKSYYVD*GSSGAE 12
           L++ +DP CH+       LP +     C+     ++CS     R+K   +D G S  E
Sbjct: 30  LLQPSDPPCHVCSQSLSLLPHLNPNYRCNTSLLIDYCSKEEDGRHKYILIDVGKSFRE 87


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +1

Query: 79  KLKEHGASSCISGKRGRRCCNIWHWGSVDSISG 177
           K+ EH ASS       R   N W  GSV  ISG
Sbjct: 425 KMVEHDASSKAGTPHFRNRTNKWEDGSVSEISG 457


>At1g68430.1 68414.m07817 expressed protein
          Length = 146

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 210 RQEAQPLLHKHTTEISGRQ 266
           R+E QPL+H H  +++GR+
Sbjct: 53  RREQQPLIHHHHKDVAGRK 71


>At4g16141.1 68417.m02446 expressed protein contains 1 predicted
           transmembrane domain; contains a partial Pfam PF00320:
           GATA zinc finger profile
          Length = 226

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 374 KTEKVRSWSDVENG*CLASPHGVGATMAAAVNCDT 270
           K E     SDV+NG C +S  G G T    V+C T
Sbjct: 11  KLESAGDSSDVDNGNCSSSGSG-GDTKKTCVDCGT 44


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,179,458
Number of Sequences: 28952
Number of extensions: 170571
Number of successful extensions: 413
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)