Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10884
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.67 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.6  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   4.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   4.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.3  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -3

Query: 524 HPWVRLTTVQHTASHVLAMTGVAFHHLVGGLEACV 420
           H W+R   +     H    TG    H+VGGL   +
Sbjct: 181 HGWMRRNVLNKQHVHFHDYTGSVVIHVVGGLTGLI 215


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 280 PSNLKEAVMRRQSVR*DDSG 221
           P  L+EAV+R +SV+ +D G
Sbjct: 347 PLGLEEAVLRIESVKKEDKG 366


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = -2

Query: 528 FTSLGTTH-HGTAYSKPCTCHDGGRISPSGW 439
           + SLG    H   ++ PC CH  G+     W
Sbjct: 26  YVSLGALKMHIRTHTLPCKCHLCGKAFSRPW 56


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 586 NRFQGRYQLPA 618
           NRF G Y++PA
Sbjct: 435 NRFSGEYEIPA 445


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 547 QNQAYYPIRRLVSNRFQGRYQ 609
           Q +A+Y +R   +N FQ +YQ
Sbjct: 17  QAKAHYSLRDFKANIFQVKYQ 37


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 210 NLHQPESSHRTDCLLITASLRFDGAL 287
           NLH PE S R + L   +SL   G L
Sbjct: 172 NLHDPEYSARENELRALSSLFSKGCL 197


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 210 NLHQPESSHRTDCLLITASLRFDGAL 287
           NLH PE S R + L   +SL   G L
Sbjct: 172 NLHDPEYSARENELRALSSLFSKGCL 197


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 210 NLHQPESSHRTDCLLITASLRFDGAL 287
           NLH PE S R + L   +SL   G L
Sbjct: 172 NLHDPEYSARENELRALSSLFSKGCL 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,133
Number of Sequences: 438
Number of extensions: 4931
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)