Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10880X
         (353 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    78   5e-16
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    56   1e-09
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    33   0.017
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    29   0.28 
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    25   2.6  
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ...    25   3.4  
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy...    25   4.5  
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    25   4.5  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    24   6.0  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    24   7.9  

>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 77.8 bits (183), Expect = 5e-16
 Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
 Frame = +1

Query: 1   ISDALNHASIIDGIRLCKAQKYRYPHRDLTELEHLLAHSDA-RIKLIVTDGVFSMDGTVA 177
           +SD +NHAS+I+GIR  + +K  + H DL +LE  LA     R K+I  + V+SM G VA
Sbjct: 264 LSDEMNHASMINGIRNSRCEKIIFKHNDLVDLEAKLASLPLNRPKIIAFESVYSMSGNVA 323

Query: 178 PIKGLRDLADKYRALLVVDDSHATGFSG 261
           PI  + DLA KY A+  +D+ HA G  G
Sbjct: 324 PISEICDLAKKYGAITFLDEVHAVGMYG 351


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 56.4 bits (130), Expect = 1e-09
 Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
 Frame = +1

Query: 1   ISDALNHASIIDGIRLCKAQKYRYPHRDLTELEHLL----------AHSDARIKLIVTDG 150
           ISD LNH SI  G RL  A    Y H D+T+LE +L           H      L+V +G
Sbjct: 276 ISDELNHTSIRFGARLSGANIRVYKHNDMTDLERVLREVISQGQPRTHRPYSKILVVIEG 335

Query: 151 VFSMDGTVAPIKGLRDLADKYRALLVVDDSHATGFSG 261
           ++SM+G    +  + +L ++Y+  L +D++H+ G  G
Sbjct: 336 LYSMEGNFCDLPKVVELKNRYKFYLFIDEAHSIGAIG 372


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 32.7 bits (71), Expect = 0.017
 Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
 Frame = +1

Query: 1   ISDALNHASIIDGIRLCKAQKYRYPHRDLTELEHLLAH-SDARIK--------LIVTDGV 153
           + +A N A I  GI++ +     + H ++ +LE +L    D  +K         I+T+G+
Sbjct: 216 VDEACNFA-IQKGIQISRTTIRYFKHNNMKDLERILQELEDDFVKHNRPLTRRFIITEGI 274

Query: 154 FSMDGTVAPIKGLRDLADKYRALLVVDDSHATGFSGKLAEAL 279
               G +  +  +  L  KY+  L++D++ + G  G+  + L
Sbjct: 275 SENYGDMVDLTKIVALKKKYKYRLILDETWSFGTCGRTGKGL 316


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 28.7 bits (61), Expect = 0.28
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 302 PHNTAILFSASASFPEKPVAWLSSTTNKALYLSARSLRP 186
           PH T IL SA+    ++  +W+  T  K +Y+ +   RP
Sbjct: 416 PHVTLILLSATVPNTKEFASWVGRTKKKNIYVISTLKRP 454


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +1

Query: 148 GVFSMDGTVAPIKGLRDLADKYRALLVVDDSHATGFSGKLAEALKSIAVLWGRRISSVRP 327
           G F + G    I+ LR LAD     ++ D  H      +  + L+ +A    R   +V  
Sbjct: 217 GTFDLQGINNQIESLRKLADYCLNFVLKDGFHGGDTGNRYEKLLRDVAY---RNAKTVAK 273

Query: 328 W 330
           W
Sbjct: 274 W 274


>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 85  LTELEHLLAHSDARIKLIVTDGVFSMDGTVAPIKGLRDLADKYRALLVVDDSHATG 252
           L E+E     S  R    + D + SM   + P + +  L  KY  + ++D +HA G
Sbjct: 146 LKEVEQRFLQSKPRA--FICDILSSMPVILFPWEKVVKLCKKYNIVSIIDGAHAIG 199


>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 256

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 174 HSPVHREYSVCYY 136
           H+P H + S+CYY
Sbjct: 114 HTPCHTQDSICYY 126


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 190 LRDLADKYRALLVVDDSHATG 252
           +R +AD   A LVVD +H +G
Sbjct: 200 MRQIADSVNAYLVVDMAHISG 220


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 13  LNHASIIDGIRLCKAQKYRYPHRDLTELEHLL 108
           ++  S+++G+R   A+ Y YP     E+  LL
Sbjct: 499 ISFISVVEGMRKRLAKSYVYPEIKFPEISDLL 530


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 158 ENTPSVTISLILASLCANKCSNSVKSL*GYRYFCAL 51
           + +P +  SL LAS      S  ++S  GYR+FC +
Sbjct: 109 DGSPILATSLALASFI----SAYIRSRYGYRFFCII 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,457,966
Number of Sequences: 5004
Number of extensions: 25755
Number of successful extensions: 90
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)