Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10879X
(433 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 177 2e-45
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 177 2e-45
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 176 5e-45
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 176 5e-45
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 164 3e-41
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 164 3e-41
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 156 5e-39
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 82 1e-16
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 77 5e-15
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 77 7e-15
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 77 7e-15
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 76 9e-15
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 76 9e-15
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 75 2e-14
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 75 2e-14
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 75 2e-14
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 54 6e-08
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 53 7e-08
At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR016... 29 1.0
At4g14510.1 68417.m02236 expressed protein contains Pfam domain,... 29 1.8
At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si... 27 4.1
At5g09370.1 68418.m01085 protease inhibitor/seed storage/lipid t... 27 5.5
At2g41680.1 68415.m05149 thioredoxin reductase, putative / NADPH... 27 5.5
At5g56020.1 68418.m06990 expressed protein 27 7.2
At5g12120.1 68418.m01423 ubiquitin-associated (UBA)/TS-N domain-... 27 7.2
At5g04660.1 68418.m00474 cytochrome P450, putative cytochrome P4... 27 7.2
At2g28530.1 68415.m03466 RNA recognition motif (RRM)-containing ... 27 7.2
At1g18260.1 68414.m02277 suppressor of lin-12-like protein-relat... 27 7.2
At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing ... 26 9.6
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 177 bits (432), Expect = 2e-45
Identities = 77/85 (90%), Positives = 85/85 (100%)
Frame = +3
Query: 3 GIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFH 182
GIQPDGQMP+DKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFH
Sbjct: 29 GIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFH 88
Query: 183 PQQLITGKEDAANNYARGHYTIGKK 257
P+QLI+GKEDAANN+ARGHYTIGK+
Sbjct: 89 PEQLISGKEDAANNFARGHYTIGKE 113
Score = 85.0 bits (201), Expect = 2e-17
Identities = 41/61 (67%), Positives = 45/61 (73%)
Frame = +2
Query: 251 KEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFVI 430
KEIVDL LDRIRKLAD CTGLQGFL+F+ LL+ERLSVDYGKKSKL F +
Sbjct: 112 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTV 171
Query: 431 Y 433
Y
Sbjct: 172 Y 172
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 177 bits (432), Expect = 2e-45
Identities = 77/85 (90%), Positives = 85/85 (100%)
Frame = +3
Query: 3 GIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFH 182
GIQPDGQMP+DKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFH
Sbjct: 29 GIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFH 88
Query: 183 PQQLITGKEDAANNYARGHYTIGKK 257
P+QLI+GKEDAANN+ARGHYTIGK+
Sbjct: 89 PEQLISGKEDAANNFARGHYTIGKE 113
Score = 85.0 bits (201), Expect = 2e-17
Identities = 41/61 (67%), Positives = 45/61 (73%)
Frame = +2
Query: 251 KEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFVI 430
KEIVDL LDRIRKLAD CTGLQGFL+F+ LL+ERLSVDYGKKSKL F +
Sbjct: 112 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTV 171
Query: 431 Y 433
Y
Sbjct: 172 Y 172
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 176 bits (429), Expect = 5e-45
Identities = 77/85 (90%), Positives = 84/85 (98%)
Frame = +3
Query: 3 GIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFH 182
GIQPDGQMP DKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFH
Sbjct: 29 GIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFH 88
Query: 183 PQQLITGKEDAANNYARGHYTIGKK 257
P+QLI+GKEDAANN+ARGHYTIGK+
Sbjct: 89 PEQLISGKEDAANNFARGHYTIGKE 113
Score = 85.0 bits (201), Expect = 2e-17
Identities = 41/61 (67%), Positives = 45/61 (73%)
Frame = +2
Query: 251 KEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFVI 430
KEIVDL LDRIRKLAD CTGLQGFL+F+ LL+ERLSVDYGKKSKL F +
Sbjct: 112 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTV 171
Query: 431 Y 433
Y
Sbjct: 172 Y 172
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 176 bits (429), Expect = 5e-45
Identities = 77/85 (90%), Positives = 84/85 (98%)
Frame = +3
Query: 3 GIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFH 182
GIQPDGQMP DKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFH
Sbjct: 29 GIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFH 88
Query: 183 PQQLITGKEDAANNYARGHYTIGKK 257
P+QLI+GKEDAANN+ARGHYTIGK+
Sbjct: 89 PEQLISGKEDAANNFARGHYTIGKE 113
Score = 85.0 bits (201), Expect = 2e-17
Identities = 41/61 (67%), Positives = 45/61 (73%)
Frame = +2
Query: 251 KEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFVI 430
KEIVDL LDRIRKLAD CTGLQGFL+F+ LL+ERLSVDYGKKSKL F +
Sbjct: 112 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTV 171
Query: 431 Y 433
Y
Sbjct: 172 Y 172
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 164 bits (398), Expect = 3e-41
Identities = 71/85 (83%), Positives = 80/85 (94%)
Frame = +3
Query: 3 GIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFH 182
GIQPDG MP+D T+G D+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFH
Sbjct: 29 GIQPDGMMPSDTTVGVAHDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFH 88
Query: 183 PQQLITGKEDAANNYARGHYTIGKK 257
P+QLI+GKEDAANN+ARGHYT+GK+
Sbjct: 89 PEQLISGKEDAANNFARGHYTVGKE 113
Score = 85.0 bits (201), Expect = 2e-17
Identities = 41/61 (67%), Positives = 45/61 (73%)
Frame = +2
Query: 251 KEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFVI 430
KEIVDL LDR+RKLAD CTGLQGFL+F+ LL+ERLSVDYGKKSKL F I
Sbjct: 112 KEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTI 171
Query: 431 Y 433
Y
Sbjct: 172 Y 172
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 164 bits (398), Expect = 3e-41
Identities = 71/85 (83%), Positives = 80/85 (94%)
Frame = +3
Query: 3 GIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFH 182
GIQPDG MP+D T+G D+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFH
Sbjct: 29 GIQPDGMMPSDTTVGVAHDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFH 88
Query: 183 PQQLITGKEDAANNYARGHYTIGKK 257
P+QLI+GKEDAANN+ARGHYT+GK+
Sbjct: 89 PEQLISGKEDAANNFARGHYTVGKE 113
Score = 85.0 bits (201), Expect = 2e-17
Identities = 41/61 (67%), Positives = 45/61 (73%)
Frame = +2
Query: 251 KEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFVI 430
KEIVDL LDR+RKLAD CTGLQGFL+F+ LL+ERLSVDYGKKSKL F I
Sbjct: 112 KEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTI 171
Query: 431 Y 433
Y
Sbjct: 172 Y 172
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 156 bits (379), Expect = 5e-39
Identities = 66/85 (77%), Positives = 79/85 (92%)
Frame = +3
Query: 3 GIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFH 182
GIQPDG MP+D T+G D+FNTFFSET +G+HVPRAVF+DLEPTV+DEVRTGTYRQLFH
Sbjct: 29 GIQPDGTMPSDSTVGACHDAFNTFFSETSSGQHVPRAVFLDLEPTVIDEVRTGTYRQLFH 88
Query: 183 PQQLITGKEDAANNYARGHYTIGKK 257
P+QLI+GKEDAANN+ARGHYT+G++
Sbjct: 89 PEQLISGKEDAANNFARGHYTVGRE 113
Score = 78.2 bits (184), Expect = 2e-15
Identities = 37/61 (60%), Positives = 44/61 (72%)
Frame = +2
Query: 251 KEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFVI 430
+EIVD L+R+RKLAD CTGLQGFL+F+ LL+ERLSVD+GKKSKL F I
Sbjct: 112 REIVDTCLERLRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDFGKKSKLGFTI 171
Query: 431 Y 433
Y
Sbjct: 172 Y 172
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 82.2 bits (194), Expect = 1e-16
Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Frame = +3
Query: 27 PTDKTIGGGD---DSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPQQLI 197
PT + +G D + N +++E G++VPRA+ +DLEP +D VRTG Y Q+F P +
Sbjct: 32 PTGRYVGNSDLQLERVNVYYNEASCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFV 91
Query: 198 TGKEDAANNYARGHYTIG 251
G+ A NN+A+GHYT G
Sbjct: 92 FGQSGAGNNWAKGHYTEG 109
Score = 41.9 bits (94), Expect = 2e-04
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +2
Query: 233 WSLHHWKE---IVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYG 403
W+ H+ E ++D VLD +RK A+ C LQGF + H LL+ ++ +Y
Sbjct: 101 WAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160
Query: 404 KKSKLEFVIY 433
+ L F ++
Sbjct: 161 DRMMLTFSVF 170
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 77.0 bits (181), Expect = 5e-15
Identities = 33/83 (39%), Positives = 50/83 (60%)
Frame = +3
Query: 3 GIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFH 182
G+ P G+ D + N +++E G++VPRAV +DLEP +D +R+G Y Q+F
Sbjct: 29 GVDPTGRYNGDSA-DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFR 87
Query: 183 PQQLITGKEDAANNYARGHYTIG 251
P + G+ A NN+A+GHYT G
Sbjct: 88 PDNFVFGQSGAGNNWAKGHYTEG 110
Score = 41.9 bits (94), Expect = 2e-04
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +2
Query: 233 WSLHHWKE---IVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYG 403
W+ H+ E ++D VLD +RK A+ C LQGF + H LL+ ++ +Y
Sbjct: 102 WAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 161
Query: 404 KKSKLEFVIY 433
+ L F ++
Sbjct: 162 DRMMLTFSVF 171
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 76.6 bits (180), Expect = 7e-15
Identities = 30/65 (46%), Positives = 44/65 (67%)
Frame = +3
Query: 57 DSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPQQLITGKEDAANNYARG 236
+ N +F+E GK+VPRAV +DLEP +D +R+G + Q+F P + G+ A NN+A+G
Sbjct: 45 ERINVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKG 104
Query: 237 HYTIG 251
HYT G
Sbjct: 105 HYTEG 109
Score = 40.7 bits (91), Expect = 4e-04
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +2
Query: 233 WSLHHWKE---IVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYG 403
W+ H+ E ++D VLD +RK A+ C LQGF + H LL+ ++ +Y
Sbjct: 101 WAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160
Query: 404 KKSKLEFVIY 433
+ + F ++
Sbjct: 161 DRMMMTFSVF 170
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 76.6 bits (180), Expect = 7e-15
Identities = 30/62 (48%), Positives = 43/62 (69%)
Frame = +3
Query: 66 NTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPQQLITGKEDAANNYARGHYT 245
N +++E G++VPRAV +DLEP +D VR+G Y Q+F P + G+ A NN+A+GHYT
Sbjct: 48 NVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYT 107
Query: 246 IG 251
G
Sbjct: 108 EG 109
Score = 40.7 bits (91), Expect = 4e-04
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +2
Query: 233 WSLHHWKE---IVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYG 403
W+ H+ E ++D VLD +RK A+ C LQGF + H LL+ ++ +Y
Sbjct: 101 WAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160
Query: 404 KKSKLEFVIY 433
+ + F ++
Sbjct: 161 DRMMMTFSVF 170
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 76.2 bits (179), Expect = 9e-15
Identities = 34/83 (40%), Positives = 49/83 (59%)
Frame = +3
Query: 3 GIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFH 182
GI P G+ D + + N +++E G+ VPRAV +DLEP +D +R+G Y Q F
Sbjct: 29 GIDPTGRYTGDSDLQL--ERINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFR 86
Query: 183 PQQLITGKEDAANNYARGHYTIG 251
P + G+ A NN+A+GHYT G
Sbjct: 87 PDNFVFGQSGAGNNWAKGHYTEG 109
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +2
Query: 233 WSLHHWKE---IVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYG 403
W+ H+ E ++D VLD +RK A+ C LQGF + H LL+ ++ +Y
Sbjct: 101 WAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160
Query: 404 KKSKLEFVIY 433
+ L F ++
Sbjct: 161 DRMMLTFSVF 170
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 76.2 bits (179), Expect = 9e-15
Identities = 34/83 (40%), Positives = 49/83 (59%)
Frame = +3
Query: 3 GIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFH 182
GI P G+ D + + N +++E G+ VPRAV +DLEP +D +R+G Y Q F
Sbjct: 29 GIDPTGRYTGDSDLQL--ERINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFR 86
Query: 183 PQQLITGKEDAANNYARGHYTIG 251
P + G+ A NN+A+GHYT G
Sbjct: 87 PDNFVFGQSGAGNNWAKGHYTEG 109
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +2
Query: 233 WSLHHWKE---IVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYG 403
W+ H+ E ++D VLD +RK A+ C LQGF + H LL+ ++ +Y
Sbjct: 101 WAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160
Query: 404 KKSKLEFVIY 433
+ L F ++
Sbjct: 161 DRMMLTFSVF 170
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 75.4 bits (177), Expect = 2e-14
Identities = 30/62 (48%), Positives = 42/62 (67%)
Frame = +3
Query: 66 NTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPQQLITGKEDAANNYARGHYT 245
N +++E G+ VPRAV +DLEP +D VR+G Y Q+F P + G+ A NN+A+GHYT
Sbjct: 48 NVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYT 107
Query: 246 IG 251
G
Sbjct: 108 EG 109
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +2
Query: 233 WSLHHWKE---IVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYG 403
W+ H+ E ++D VLD +RK A+ C LQGF + H LL+ ++ +Y
Sbjct: 101 WAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160
Query: 404 KKSKLEFVIY 433
+ L F ++
Sbjct: 161 DRMMLTFSVF 170
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 74.9 bits (176), Expect = 2e-14
Identities = 34/83 (40%), Positives = 50/83 (60%)
Frame = +3
Query: 3 GIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFH 182
GI GQ D + + + +F+E GK+VPRAV +DLEP +D +R+G + Q+F
Sbjct: 29 GIDHTGQYVGDSPLQL--ERIDVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFR 86
Query: 183 PQQLITGKEDAANNYARGHYTIG 251
P + G+ A NN+A+GHYT G
Sbjct: 87 PDNFVFGQSGAGNNWAKGHYTEG 109
Score = 36.7 bits (81), Expect = 0.007
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +2
Query: 233 WSLHHWKE---IVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYG 403
W+ H+ E ++D VLD +RK A+ LQGF + H LL+ ++ +Y
Sbjct: 101 WAKGHYTEGAELIDSVLDVVRKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160
Query: 404 KKSKLEFVIY 433
+ + F ++
Sbjct: 161 DRMMMTFSVF 170
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 74.9 bits (176), Expect = 2e-14
Identities = 28/65 (43%), Positives = 44/65 (67%)
Frame = +3
Query: 57 DSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPQQLITGKEDAANNYARG 236
+ N +++E G++VPRAV +DLEP +D +R+G + Q+F P + G+ A NN+A+G
Sbjct: 46 ERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKG 105
Query: 237 HYTIG 251
HYT G
Sbjct: 106 HYTEG 110
Score = 41.9 bits (94), Expect = 2e-04
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +2
Query: 233 WSLHHWKE---IVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYG 403
W+ H+ E ++D VLD +RK A+ C LQGF + H LL+ ++ +Y
Sbjct: 102 WAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 161
Query: 404 KKSKLEFVIY 433
+ L F ++
Sbjct: 162 DRMMLTFSVF 171
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 53.6 bits (123), Expect = 6e-08
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = +3
Query: 3 GIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFH 182
GI DG + T GG D + FF + ++PRA+ +DLEP V++ ++ G YR L++
Sbjct: 30 GISKDGILEDFATQGG--DRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGDYRNLYN 87
Query: 183 PQQLITGKE--DAANNYARGHY 242
+ + A NN+A G++
Sbjct: 88 HENIFVADHGGGAGNNWASGYH 109
Score = 31.1 bits (67), Expect = 0.34
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +2
Query: 242 HHWKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKK 409
H K + + ++D I + AD L+GF++ H L+E L+ Y KK
Sbjct: 109 HQGKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKK 164
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 53.2 bits (122), Expect = 7e-08
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = +3
Query: 3 GIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFH 182
GI DG + T GG D + FF + ++PRA+ +DLEP V++ ++ G YR L++
Sbjct: 30 GISKDGILEDFATQGG--DRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGEYRNLYN 87
Query: 183 PQQLITGKE--DAANNYARGHY 242
+ + A NN+A G++
Sbjct: 88 HENIFLSDHGGGAGNNWASGYH 109
Score = 31.1 bits (67), Expect = 0.34
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +2
Query: 242 HHWKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKK 409
H K + + ++D I + AD L+GF++ H L+E L+ Y KK
Sbjct: 109 HQGKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKK 164
>At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; similar to Myosin heavy
chain, non-muscle (Zipper protein) (Myosin II)
(SP:Q99323) {Drosophila melanogaster} similar to EST
gb|T76116
Length = 1730
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 355 AGTSTEGVEDQESLQTGTLVSELADSVQNQIYD 257
+G TEGVED S LV D ++ QI D
Sbjct: 609 SGLMTEGVEDHTSSDINLLVDRSFDKIEKQIRD 641
>At4g14510.1 68417.m02236 expressed protein contains Pfam domain,
PF04581: Protein of unknown function (DUF578)
Length = 932
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 3 GIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVD 146
GIQ +G + ++ + G D +T F + A P FV+L+ +D
Sbjct: 883 GIQANGSL-SETDVEFGSDESDTDFGDNSASSTTPETTFVELQNEELD 929
>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein
similar to alpha-mannosidase II SP:P27046 from [Mus
musculus]
Length = 1173
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 221 QLCPWSLHHWKEIVDLVLDRIRKLADQ 301
+LCPW H + ++ V +R KL DQ
Sbjct: 368 ELCPWGKHPVETTLENVQERALKLLDQ 394
>At5g09370.1 68418.m01085 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to lipid
transfer protein - Hordeum vulgare, EMBL:AF109195;
contains Pfam protease inhibitor/seed storage/LTP family
domain PF00234
Length = 158
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -1
Query: 88 PVSLKKVLKESSPPPMVLSVGIWPSGWMP 2
PVS L +SPP +W SGW P
Sbjct: 101 PVSACDSLPPASPPTANGQAPVWGSGWAP 129
>At2g41680.1 68415.m05149 thioredoxin reductase, putative /
NADPH-dependent thioredoxin reductase, putative The last
2 exons encode thioredoxin. There is an EST match to
exons 5-7, and the distance between exon 7 and exon 8 is
only 90bp. It is unlikely this is two separate genes,
but more likely a hybrid protein.
Length = 529
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 128 KIDEDSTGYVLASSGLAEESVERIVSTPD 42
+++ DS+GYVL G + SVE + + D
Sbjct: 336 QVELDSSGYVLVREGTSNTSVEGVFAAGD 364
>At5g56020.1 68418.m06990 expressed protein
Length = 230
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -1
Query: 361 PRAGTSTEGVEDQESLQTGTLVSELAD 281
P +GTS+ G + Q+ LQTG S LAD
Sbjct: 10 PMSGTSSSGDQQQQPLQTGG-TSLLAD 35
>At5g12120.1 68418.m01423 ubiquitin-associated (UBA)/TS-N
domain-containing protein contains Pfam profile PF00627:
UBA/TS-N domain
Length = 619
Score = 26.6 bits (56), Expect = 7.2
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 9/54 (16%)
Frame = -3
Query: 182 MKQLSVCASADLINNSRFK-IDE-DSTGYVLAS-------SGLAEESVERIVST 48
++ LS S+ L NN RF+ IDE DSTG S SG +E+ E++ ST
Sbjct: 49 IESLSATGSSSLHNNGRFRHIDESDSTGADCDSVSNNGSWSGESEDHKEKVPST 102
>At5g04660.1 68418.m00474 cytochrome P450, putative cytochrome P450
77A3p, Glycine max., PIR:T05948
Length = 512
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 84 TGAGKHVPRAVFVDLE-PTVVDEVRTGTYRQLFHPQQLITGKEDA 215
T AG +P V V++ P + ++ R + F P + + GKEDA
Sbjct: 392 TLAGYDIPAGVNVEVYLPGISEDPRIWNNPKKFDPDRFMLGKEDA 436
>At2g28530.1 68415.m03466 RNA recognition motif (RRM)-containing
protein similar to SP|P34909 General negative regulator
of transcription subunit 4 {Saccharomyces cerevisiae};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 236
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 209 RCGQQLCPWSLHHWKEIVD 265
+CG Q+C W HH E+ +
Sbjct: 27 KCGYQICVWCWHHIIEMAE 45
>At1g18260.1 68414.m02277 suppressor of lin-12-like protein-related
/ sel-1 protein-related similar to Sel-1 homolog
precursor (Suppressor of lin-12-like protein)
(Sel-1L)(SP:Q9UBV2) {Homo sapiens}
Length = 678
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 54 DDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHP 185
+D N+ + G G+ F + EP +E+ G++R +F P
Sbjct: 34 NDDLNSGGDDNGVGESSDFDEFGESEPKSEEELDPGSWRSIFEP 77
>At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing
protein similar to SP|P34909 General negative regulator
of transcription subunit 4 {Saccharomyces cerevisiae};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 989
Score = 26.2 bits (55), Expect = 9.6
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +2
Query: 209 RCGQQLCPWSLHHWKEIVD 265
+CG Q+C W HH ++ +
Sbjct: 27 KCGYQICVWCWHHIMDMAE 45
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,872,891
Number of Sequences: 28952
Number of extensions: 193239
Number of successful extensions: 655
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -