Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10874
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 163 3e-41
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 162 3e-41
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 25 7.2
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac... 25 7.2
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 7.2
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 9.5
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 9.5
>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 163 bits (395), Expect = 3e-41
Identities = 79/111 (71%), Positives = 92/111 (82%)
Frame = +2
Query: 260 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 439
GH CYRPRRDGERKRKSVRGCIV +L+VLAL IV++G Q+IPGLTD VP+RLGPKRAS
Sbjct: 80 GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRLGPKRAS 139
Query: 440 KIRKLFNLSKEDDVRRYVVKRVLQLRKEKKTLNPDNKAPKIQRLVTPVVLQ 592
KIR+ FNLSKEDDVR++V++R + +KE K P KAPKIQRLVTP LQ
Sbjct: 140 KIRRFFNLSKEDDVRQFVIRREVVPKKEGK--KPYTKAPKIQRLVTPRTLQ 188
Score = 111 bits (268), Expect = 6e-26
Identities = 55/98 (56%), Positives = 67/98 (68%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 204 FPMKQGVLTNSRVRLLMQRATHVTDRAAMERENVNQFV 317
FPM QGVL RVRLL+ RA H R + E + V
Sbjct: 61 FPMFQGVLLPHRVRLLL-RAGHPCYRPRRDGERKRKSV 97
>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 162 bits (394), Expect = 3e-41
Identities = 78/111 (70%), Positives = 92/111 (82%)
Frame = +2
Query: 260 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 439
GH CYRPRRDGERKRKSVRGCIV +L+VLAL I+++G Q+IPGLTD VP+RLGPKRAS
Sbjct: 80 GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKRLGPKRAS 139
Query: 440 KIRKLFNLSKEDDVRRYVVKRVLQLRKEKKTLNPDNKAPKIQRLVTPVVLQ 592
KIR+ FNLSKEDDVR++V++R + +KE K P KAPKIQRLVTP LQ
Sbjct: 140 KIRRFFNLSKEDDVRQFVIRREVVPKKEGK--KPYTKAPKIQRLVTPRTLQ 188
Score = 111 bits (268), Expect = 6e-26
Identities = 55/98 (56%), Positives = 67/98 (68%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 204 FPMKQGVLTNSRVRLLMQRATHVTDRAAMERENVNQFV 317
FPM QGVL RVRLL+ RA H R + E + V
Sbjct: 61 FPMFQGVLLPHRVRLLL-RAGHPCYRPRRDGERKRKSV 97
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 25.4 bits (53), Expect = 7.2
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Frame = +3
Query: 45 PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGV 224
P LFE + Y +R+ + ++L EW G++ V D + + +
Sbjct: 319 PRRAPMDLFEAKRKKNNIKLYVRRVFITDDCEELIPEWLGFIKGVVDSEDLP-LNLSREM 377
Query: 225 LTNSRV-----RLLMQRATHVTDRAAMERENVNQFVD 320
L +++ + L++R + + A ++EN F D
Sbjct: 378 LQQNKIMKVIRKNLVRRCLDMFNEIAEDKENFKTFYD 414
>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 422 GPKRASKIRKLFNLSKEDDVRRYVVKRVLQLRKEKK 529
GP+R IR+ + D++++Y K Q EKK
Sbjct: 71 GPERFEMIRQKYKALTADEIQKYKNKLQEQFDAEKK 106
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 478 IIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQD 344
+I + K E + GSTFG +G R++ L H+N QD
Sbjct: 98 VIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDNDIQD 139
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = +3
Query: 150 DEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMQRATHVTDRAAMERENVNQFVDVLL 329
DEW GG DK G ++ +L R+ +++ + +E+E ++ V+
Sbjct: 1055 DEWFNTPFANTGGQDKIGLNEEEALLIIKRLHKVLRPFLFRRLKKDVEKELPDKVEKVIK 1114
Query: 330 TPIS 341
P+S
Sbjct: 1115 CPLS 1118
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 44 PGNGMPEVVRSGGRAQASYLLR 109
PG+G+P +V R AS +LR
Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,136
Number of Sequences: 5004
Number of extensions: 52226
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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