Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10874
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              177   5e-45
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   37   0.016
SB_20138| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)                 29   3.3  
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)                      29   3.3  
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)                     29   3.3  
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      29   4.4  
SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  177 bits (432), Expect = 5e-45
 Identities = 94/155 (60%), Positives = 112/155 (72%), Gaps = 9/155 (5%)
 Frame = +2

Query: 155 MEGLCTSCRWRQRQARIP---DETGRPDKQPCSSSD------AKGHSCYRPRRDGERKRK 307
           + G C    W+    RI    D+ G P KQ   ++       +KGHSCYRPRR GERKRK
Sbjct: 3   VSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRK 62

Query: 308 SVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRR 487
           SVRGCIVD+ LSVL+LVIV+KG Q+IPGLTD  +PRRLGPKR  KIRK+FNLSKEDDVR+
Sbjct: 63  SVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQ 122

Query: 488 YVVKRVLQLRKEKKTLNPDNKAPKIQRLVTPVVLQ 592
           YV++R L  ++ KK     +KAPKIQRLVTPVVLQ
Sbjct: 123 YVIRRPLPEKEGKKA---KSKAPKIQRLVTPVVLQ 154



 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 32/45 (71%), Positives = 38/45 (84%)
 Frame = +3

Query: 126 EVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMQR 260
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+ +
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSK 46


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -1

Query: 251 QKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVK 102
           Q+ + A+  D L H +SL V+  SD + ++LP I   +  Y   H L ++
Sbjct: 257 QEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_20138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 860

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 449 KLFNLSKEDDVR-RYVVKRVLQLRKEKKTLNPDNKAPKIQRLVTPVV 586
           K F   +ED VR + V+KR+  L +E++  NP      IQ  V  +V
Sbjct: 19  KAFYHEQEDSVREKTVIKRIANLEEEQRASNPQQVRGAIQEGVNDLV 65


>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
          Length = 273

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +2

Query: 293 ERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASK-IRKLFNLSK 469
           + K KSV+   VD + S   L   R  AQE   L DG   ++L    A K + K   L K
Sbjct: 191 DNKNKSVKATTVDKSASENKLKRKRNSAQE--NLDDGVKRKKLKDAGAMKSLVKELELEK 248

Query: 470 EDDVRRYVVKRVLQLRKEKK 529
             + R  +V+   + +KEK+
Sbjct: 249 LVEQRSELVQEKQKKKKEKE 268


>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
          Length = 172

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 311 VRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRK 451
           VR C +D   +VLA  +  + A E  GLT+G V    GP R   +++
Sbjct: 86  VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130


>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
          Length = 291

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +2

Query: 401 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK---RVLQLRKEKKTLNPDNKAP 556
           G+   + GP + SKI K+    ++DDV+  VVK       L + +  +N +   P
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVKPGESAYSLNERRNEINDNRLKP 275


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 132 EADQLGDEWKGYVL--RVAGGNDKQGFPMK 215
           E D+ G EW+G+V      G  D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844


>SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 449 KLFNLSKEDDVRRYVVKRVLQLRKEKKTLNPDNKAPKIQR 568
           + F+++KEDD+  Y++   L +R  K      N+ P+  R
Sbjct: 137 RAFDVTKEDDITMYIIITPLFMRARKNNAMEYNQKPRDPR 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,169,431
Number of Sequences: 59808
Number of extensions: 449148
Number of successful extensions: 1350
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)