Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10874
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   137   6e-33
Z54281-4|CAA91049.1|  199|Caenorhabditis elegans Hypothetical pr...    31   0.94 
AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical...    30   1.6  
AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascula...    28   6.7  
AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical ...    27   8.8  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  137 bits (332), Expect = 6e-33
 Identities = 71/109 (65%), Positives = 83/109 (76%), Gaps = 1/109 (0%)
 Frame = +2

Query: 257 KGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRA 436
           KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  EI GLTD  +PR+LGPKRA
Sbjct: 79  KGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDSVLPRKLGPKRA 138

Query: 437 SKIRKLFNLSKEDDVRRYVVKRVLQLRK-EKKTLNPDNKAPKIQRLVTP 580
           SKIRKLFNL+K DDV +YV+           KT+     APKIQRL+TP
Sbjct: 139 SKIRKLFNLTKHDDVTKYVITHDKTFPDGVTKTI-----APKIQRLITP 182



 Score =  128 bits (309), Expect = 3e-30
 Identities = 56/79 (70%), Positives = 67/79 (84%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
           M+LN +YPATG QK FEV +E KLR+F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 204 FPMKQGVLTNSRVRLLMQR 260
           FPMKQG+LTN RVRLL+++
Sbjct: 61  FPMKQGILTNGRVRLLLKK 79


>Z54281-4|CAA91049.1|  199|Caenorhabditis elegans Hypothetical
           protein F46C5.7 protein.
          Length = 199

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 18/72 (25%), Positives = 35/72 (48%)
 Frame = -1

Query: 323 YIHELIYVFSLHRGAVCNMSGPLHQKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA* 144
           ++  L+Y+   + G+V N    LH  T +A     +     L+ +   ++ YIA  ++A 
Sbjct: 68  FVFVLLYL-EFYFGSVYNCPALLHLHTLSAAFMSMVCWLSVLIPIFFGESIYIASRYVAH 126

Query: 143 LISLYFGAHALF 108
           +I  Y+G   +F
Sbjct: 127 VIYKYYGCQVIF 138


>AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical
           protein F40G9.1 protein.
          Length = 636

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
 Frame = +3

Query: 42  YPATGCQKLFEVVDEHK---LRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 212
           Y   G  ++FE+  E K    RIF EK +   +   ++ ++     L++ G NDK+   +
Sbjct: 6   YLHVGLNRIFEIAKEKKNGKFRIFLEKNVKNVIFLQEIFEKSLFLCLKINGSNDKK--QL 63

Query: 213 KQGVLTNSRVRLLMQRATHVTDRAAMERE 299
              V    +V   MQ  T ++D  A+ ++
Sbjct: 64  ANDVREAQKVLRTMQ--TRISDLKALGKD 90


>AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 2
           protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 57  CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 200
           C K F+   + ++    E+++  E E  Q  D W G  LR  G  DK+
Sbjct: 272 CVKFFKNYMQEEVVQNIERKLQFEREEQQELDSWTGKSLRAEGVEDKE 319


>AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical
            protein Y48G1C.5 protein.
          Length = 1161

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 347  LALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVV 496
            L L   +K  QE+        P  +GPK A +IR L  L  + +   +VV
Sbjct: 1010 LLLTFGKKRTQEVTHYQYTGWPEHMGPKDAEEIRYLLKLVTDSERPVFVV 1059


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,415,731
Number of Sequences: 27780
Number of extensions: 312946
Number of successful extensions: 886
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)