Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10874
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             135   2e-32
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   131   3e-31
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    31   0.67 
At1g75300.1 68414.m08747 isoflavone reductase, putative identica...    30   1.2  
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    30   1.5  
At1g75290.1 68414.m08746 isoflavone reductase, putative similar ...    29   2.7  
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl...    29   3.6  
At1g21390.1 68414.m02676 expressed protein                             28   4.7  
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    28   6.2  
At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP...    27   8.2  

>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  135 bits (327), Expect = 2e-32
 Identities = 73/116 (62%), Positives = 85/116 (73%), Gaps = 4/116 (3%)
 Frame = +2

Query: 257 KGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPK 430
           +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG  ++PGLTD   PR  GPK
Sbjct: 79  RGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLPGLTDTEKPRMRGPK 138

Query: 431 RASKIRKLFNLSKEDDVRRYV--VKRVLQLRKEKKTLNPDNKAPKIQRLVTPVVLQ 592
           RASKIRKLFNL KEDDVR+YV   +R    +K KK     +KAPKIQRLVTP+ LQ
Sbjct: 139 RASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKV----SKAPKIQRLVTPLTLQ 190



 Score =  112 bits (270), Expect = 2e-25
 Identities = 50/81 (61%), Positives = 61/81 (75%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
           MK NV+ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 204 FPMKQGVLTNSRVRLLMQRAT 266
           FPMKQGVLT  RVRLL+ R T
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGT 81


>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  131 bits (317), Expect = 3e-31
 Identities = 72/116 (62%), Positives = 84/116 (72%), Gaps = 4/116 (3%)
 Frame = +2

Query: 257 KGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPK 430
           +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG  ++PGLTD   PR  GPK
Sbjct: 79  RGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPK 138

Query: 431 RASKIRKLFNLSKEDDVRRYV--VKRVLQLRKEKKTLNPDNKAPKIQRLVTPVVLQ 592
           RASKIRKLFNL KEDDVR YV   +R    +K K+     +KAPKIQRLVTP+ LQ
Sbjct: 139 RASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEV----SKAPKIQRLVTPLTLQ 190



 Score =  113 bits (273), Expect = 7e-26
 Identities = 51/81 (62%), Positives = 61/81 (75%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
           MK NV+ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 204 FPMKQGVLTNSRVRLLMQRAT 266
           FPMKQGVLT  RVRLL+ R T
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGT 81


>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 13/45 (28%), Positives = 29/45 (64%)
 Frame = +2

Query: 392 LTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLQLRKEK 526
           + +G+V ++   ++A +  K   + KEDDVR+  +KR+  ++K++
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKE 332


>At1g75300.1 68414.m08747 isoflavone reductase, putative identical
           to SP|P52577 Isoflavone reductase homolog P3 (EC
           1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile
           PF02716: Isoflavone reductase
          Length = 322

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 461 LSKEDDVRRYVVKRVLQLRKEKKTL--NPDNKAPKIQRLVT 577
           ++KE+DV  Y++K V  LR   KTL  +P N    +  +VT
Sbjct: 205 INKEEDVAAYMIKAVDDLRTLNKTLYISPPNNILSMNEMVT 245


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 9   GLTAVMKLNVSYPATGCQKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 155
           GLT  +   +       +KL+ EV DE KLR+ YE++     + D LG E
Sbjct: 585 GLTGNLSATLEQLYAWEKKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634


>At1g75290.1 68414.m08746 isoflavone reductase, putative similar to
           SP|P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-)
           {Arabidopsis thaliana}; contains Pfam profile PF02716:
           Isoflavone reductase
          Length = 323

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 461 LSKEDDVRRYVVKRVLQLRKEKKTL--NPDNKAPKIQRLVT 577
           ++KE+D+  Y +K V   R   KTL  NP N    +  +VT
Sbjct: 196 INKEEDIAAYTIKAVDDPRTLNKTLYINPPNNTLSMNEIVT 236


>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
           glyoxalase I, putative similar to putative
           lactoylglutathione lyase SP:Q39366, GI:2494843 from
           [Brassica oleracea]
          Length = 350

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 45  PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 212
           P   CQ +  V D  +   FYEK  G E+   +   E+K Y + + G   +  FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270


>At1g21390.1 68414.m02676 expressed protein
          Length = 248

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
 Frame = +2

Query: 161 GLCTSCRWRQRQARIPDETGRPDKQPCSSSDAKGHSCYRPRRD-GERKRKSVRGCIVDAN 337
           G+C+   WR    + P    RP+     S D+K  +  R +R+  E   K    C     
Sbjct: 28  GVCSPTLWRTSPPKSPPPFHRPEDYWSLSPDSKAQAIARGQRELMEMVSKMPESCY---E 84

Query: 338 LSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRR 487
           LS+  LV V+   +    + D  +P+R    R SK+ +     K  D  R
Sbjct: 85  LSLKDLVEVKVNQENERKVFD-ELPKR--ANRQSKVVRKTKSDKRVDPNR 131


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 380 EIPGLTDGNVPRRLGPKRASKIRKL 454
           E+PGL D  V   L PK+ ++++KL
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644


>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
           identical to fatty acid multifunctional protein (AtMFP2)
           GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
           acid beta-oxidation); contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 725

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +2

Query: 230 KQPCSSSDAKGHSCYRPRRDGERKRKSVRGCIV--DANLSVLALVIVRKGAQEIPGLTD- 400
           K P    DA         R G  K   V   +V  D    ++ +   ++G  ++PG+TD 
Sbjct: 246 KHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDR 305

Query: 401 GNVPRRL 421
           G VPR++
Sbjct: 306 GLVPRKI 312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,746,483
Number of Sequences: 28952
Number of extensions: 293756
Number of successful extensions: 830
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)