Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10873
(441 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P49207 Cluster: 60S ribosomal protein L34; n=62; Fungi/... 95 6e-19
UniRef50_Q6E6C0 Cluster: Large subunit ribosomal protein L34e; n... 90 2e-17
UniRef50_Q42351 Cluster: 60S ribosomal protein L34-1; n=29; Euka... 89 4e-17
UniRef50_P87262 Cluster: 60S ribosomal protein L34-A; n=55; Euka... 86 4e-16
UniRef50_A7AVD9 Cluster: Ribosomal protein L34, putative; n=1; B... 83 3e-15
UniRef50_Q5CVM8 Cluster: 60S ribosomal protein L34; n=2; Cryptos... 82 6e-15
UniRef50_Q4MZM9 Cluster: 60S ribosomal protein L34a, putative; n... 79 4e-14
UniRef50_Q7RF49 Cluster: Ribosomal protein L34e, putative; n=5; ... 79 6e-14
UniRef50_Q4WI54 Cluster: Ribosomal protein L34 protein, putative... 79 6e-14
UniRef50_A0D0J3 Cluster: Chromosome undetermined scaffold_33, wh... 72 5e-12
UniRef50_UPI000049A50B Cluster: 60S ribosomal protein L34; n=3; ... 71 1e-11
UniRef50_Q8SSA2 Cluster: 60S ribosomal protein L34; n=1; Encepha... 62 7e-09
UniRef50_A2DT99 Cluster: Ribosomal protein L34e, putative; n=3; ... 61 1e-08
UniRef50_O14396 Cluster: Putative uncharacterized protein; n=1; ... 54 1e-06
UniRef50_Q9UZJ7 Cluster: 50S ribosomal protein L34e; n=8; Archae... 54 1e-06
UniRef50_Q8TZB2 Cluster: 50S ribosomal protein L34e; n=3; Archae... 53 3e-06
UniRef50_Q17JY6 Cluster: Ribosomal protein L34, putative; n=1; A... 50 2e-05
UniRef50_O26137 Cluster: 50S ribosomal protein L34e; n=3; Methan... 50 2e-05
UniRef50_Q4Q141 Cluster: 60S ribosomal protein L34, putative; n=... 46 5e-04
UniRef50_P58026 Cluster: 50S ribosomal protein L34e; n=4; Thermo... 46 5e-04
UniRef50_A1RXV1 Cluster: Ribosomal protein L34e; n=1; Thermofilu... 45 8e-04
UniRef50_Q8ZTJ2 Cluster: 50S ribosomal protein L34e; n=3; Pyroba... 41 0.010
UniRef50_Q6LZK0 Cluster: Ribosomal protein L34e; n=5; Methanococ... 39 0.041
UniRef50_Q3LW25 Cluster: Ribosomal protein L34; n=1; Bigelowiell... 36 0.51
UniRef50_Q9YG49 Cluster: Putative uncharacterized protein; n=1; ... 33 3.6
UniRef50_UPI0000EBF257 Cluster: PREDICTED: hypothetical protein;... 32 4.7
UniRef50_A1IBG0 Cluster: Glycosyltransferases involved in cell w... 32 4.7
UniRef50_Q4ZWB5 Cluster: Putative uncharacterized protein; n=1; ... 32 6.3
UniRef50_Q74NH0 Cluster: NEQ297; n=1; Nanoarchaeum equitans|Rep:... 32 6.3
>UniRef50_P49207 Cluster: 60S ribosomal protein L34; n=62;
Fungi/Metazoa group|Rep: 60S ribosomal protein L34 -
Homo sapiens (Human)
Length = 117
Score = 95.1 bits (226), Expect = 6e-19
Identities = 46/80 (57%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Frame = +2
Query: 17 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 190
MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK K P+ CG C +LRG++ R
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60
Query: 191 PAERSRLCYRKKTVKRVYGG 250
P RL KK V R YGG
Sbjct: 61 PKVLMRLSKTKKHVSRAYGG 80
Score = 39.1 bits (87), Expect = 0.041
Identities = 20/25 (80%), Positives = 21/25 (84%), Gaps = 1/25 (4%)
Frame = +1
Query: 256 CHKCVKQRIVRAFLIEEQKI-VKVL 327
C KCV+ RI RAFLIEEQKI VKVL
Sbjct: 83 CAKCVRDRIKRAFLIEEQKIVVKVL 107
>UniRef50_Q6E6C0 Cluster: Large subunit ribosomal protein L34e; n=1;
Antonospora locustae|Rep: Large subunit ribosomal
protein L34e - Antonospora locustae (Nosema locustae)
Length = 113
Score = 89.8 bits (213), Expect = 2e-17
Identities = 43/78 (55%), Positives = 54/78 (69%)
Frame = +2
Query: 17 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 196
MVQ LT R R +YN SNQ++I RTPG R VY KKP ++P+C +C+SKLRGI RPA
Sbjct: 1 MVQHLTHRGRRTYNNASNQKKIRRTPGNRRVYIPKKKPGRVPKCVKCRSKLRGIDICRPA 60
Query: 197 ERSRLCYRKKTVKRVYGG 250
+RL ++TV R YGG
Sbjct: 61 AFARLRKSQRTVARTYGG 78
>UniRef50_Q42351 Cluster: 60S ribosomal protein L34-1; n=29;
Eukaryota|Rep: 60S ribosomal protein L34-1 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 120
Score = 89.0 bits (211), Expect = 4e-17
Identities = 45/81 (55%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
Frame = +2
Query: 17 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 196
MVQRL +R R SY TKSNQ RIV+TPGG+LVYQ KK P+C +++GI RP+
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60
Query: 197 E--RSRLCYRKKTVKRVYGGV 253
E RSRL ++TV R YGGV
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGV 81
Score = 34.3 bits (75), Expect = 1.2
Identities = 14/18 (77%), Positives = 18/18 (100%)
Frame = +1
Query: 268 VKQRIVRAFLIEEQKIVK 321
V++RI+RAFL+EEQKIVK
Sbjct: 87 VRERIIRAFLVEEQKIVK 104
>UniRef50_P87262 Cluster: 60S ribosomal protein L34-A; n=55;
Eukaryota|Rep: 60S ribosomal protein L34-A -
Saccharomyces cerevisiae (Baker's yeast)
Length = 121
Score = 85.8 bits (203), Expect = 4e-16
Identities = 41/83 (49%), Positives = 53/83 (63%)
Frame = +2
Query: 17 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 196
M QR+TFRRR YNT+SN+ ++V+TPGG L Q+VKK P+CG C S L+GI RP
Sbjct: 1 MAQRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPR 60
Query: 197 ERSRLCYRKKTVKRVYGGVPAIN 265
+ + + KTV R YGG N
Sbjct: 61 QYATVSKTHKTVSRAYGGSRCAN 83
Score = 42.3 bits (95), Expect = 0.004
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = +1
Query: 256 CHKCVKQRIVRAFLIEEQKIVK 321
C CVK+RI+RAFLIEEQKIVK
Sbjct: 81 CANCVKERIIRAFLIEEQKIVK 102
>UniRef50_A7AVD9 Cluster: Ribosomal protein L34, putative; n=1;
Babesia bovis|Rep: Ribosomal protein L34, putative -
Babesia bovis
Length = 157
Score = 82.6 bits (195), Expect = 3e-15
Identities = 41/79 (51%), Positives = 50/79 (63%)
Frame = +2
Query: 17 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 196
MVQR+ RR YNT+SN++R V+TPGGRLV Q K + P+CG CK KL GI RP
Sbjct: 1 MVQRVVLRRHCRYNTRSNKQRKVKTPGGRLVVQRRVKVAQGPKCGDCKCKLAGIPALRPH 60
Query: 197 ERSRLCYRKKTVKRVYGGV 253
L R++ V R YGGV
Sbjct: 61 LYRNLKKRERRVSRAYGGV 79
Score = 41.5 bits (93), Expect = 0.008
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +1
Query: 256 CHKCVKQRIVRAFLIEEQKIVK 321
CHKCVK RI+RAFL EEQK +K
Sbjct: 81 CHKCVKDRIIRAFLKEEQKALK 102
>UniRef50_Q5CVM8 Cluster: 60S ribosomal protein L34; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L34 -
Cryptosporidium parvum Iowa II
Length = 138
Score = 81.8 bits (193), Expect = 6e-15
Identities = 38/79 (48%), Positives = 49/79 (62%)
Frame = +2
Query: 14 KMVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARP 193
KM R+T+RR+ YNT SN+ R+V+TPGGR + Q + K P+CG CK L GI P
Sbjct: 3 KMSPRVTYRRKCRYNTPSNRVRVVKTPGGRNLIQNIGKVYSRPKCGDCKKPLAGIPACAP 62
Query: 194 AERSRLCYRKKTVKRVYGG 250
E L R++TV R YGG
Sbjct: 63 YEMKHLKKRERTVARAYGG 81
Score = 39.9 bits (89), Expect = 0.024
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = +1
Query: 256 CHKCVKQRIVRAFLIEEQKIVK 321
C CV+QRI+RAFL+EEQK+VK
Sbjct: 84 CPTCVRQRILRAFLLEEQKVVK 105
>UniRef50_Q4MZM9 Cluster: 60S ribosomal protein L34a, putative; n=4;
Eukaryota|Rep: 60S ribosomal protein L34a, putative -
Theileria parva
Length = 138
Score = 79.0 bits (186), Expect = 4e-14
Identities = 40/78 (51%), Positives = 46/78 (58%)
Frame = +2
Query: 17 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 196
MVQR+ +RRR Y T SN + VRTPG RLV +KK K PRCG CK L G+ RP
Sbjct: 1 MVQRVHYRRRNKYKTPSNVVKRVRTPGARLVLHNLKKVGKRPRCGDCKRTLAGVSAVRPF 60
Query: 197 ERSRLCYRKKTVKRVYGG 250
L R +TV R YGG
Sbjct: 61 LYKNLKRRNRTVSRPYGG 78
Score = 39.5 bits (88), Expect = 0.031
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +1
Query: 256 CHKCVKQRIVRAFLIEEQKIVK 321
CH CVK RI+RAFL EEQK V+
Sbjct: 81 CHNCVKDRIIRAFLKEEQKCVR 102
>UniRef50_Q7RF49 Cluster: Ribosomal protein L34e, putative; n=5;
Plasmodium|Rep: Ribosomal protein L34e, putative -
Plasmodium yoelii yoelii
Length = 164
Score = 78.6 bits (185), Expect = 6e-14
Identities = 33/78 (42%), Positives = 49/78 (62%)
Frame = +2
Query: 17 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 196
M QR+ +R+ YNTKSN+ R +RTPGG+L +KK P+C CK+ ++G++ RPA
Sbjct: 1 MAQRVHYRKHNHYNTKSNKVRPIRTPGGKLTIHVIKKKAGKPKCADCKNPIQGVKALRPA 60
Query: 197 ERSRLCYRKKTVKRVYGG 250
+ R + + V R YGG
Sbjct: 61 DNQRARKKDRKVSRAYGG 78
Score = 36.7 bits (81), Expect = 0.22
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1
Query: 256 CHKCVKQRIVRAFLIEEQKIVK 321
C KC K+RI+RAFL EEQK V+
Sbjct: 81 CAKCXKERIMRAFLFEEQKCVR 102
>UniRef50_Q4WI54 Cluster: Ribosomal protein L34 protein, putative;
n=10; Eukaryota|Rep: Ribosomal protein L34 protein,
putative - Aspergillus fumigatus (Sartorya fumigata)
Length = 192
Score = 78.6 bits (185), Expect = 6e-14
Identities = 38/77 (49%), Positives = 48/77 (62%)
Frame = +2
Query: 20 VQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAE 199
+ R F R YNT+SN+ RI++TPGG L Y ++KK P+CG C KL GI RP E
Sbjct: 81 IDRFLFYR---YNTRSNKVRIIKTPGGELRYLHIKKKGTAPKCGDCGIKLPGIPALRPRE 137
Query: 200 RSRLCYRKKTVKRVYGG 250
S++ KKTV R YGG
Sbjct: 138 YSQISRPKKTVSRAYGG 154
Score = 41.1 bits (92), Expect = 0.010
Identities = 19/22 (86%), Positives = 19/22 (86%)
Frame = +1
Query: 256 CHKCVKQRIVRAFLIEEQKIVK 321
C CVK RIVRAFLIEEQKIVK
Sbjct: 157 CAGCVKDRIVRAFLIEEQKIVK 178
>UniRef50_A0D0J3 Cluster: Chromosome undetermined scaffold_33, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_33,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 108
Score = 72.1 bits (169), Expect = 5e-12
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Frame = +2
Query: 26 RLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSK--LRGIQPARPAE 199
R+T+RRR SYNT+SN+ R V+TPGG +V QY K C L G++ RP +
Sbjct: 4 RITYRRRTSYNTRSNKIRKVKTPGGNVVVQYPNKKTSASTCADSNLNVVLNGLKRIRPTK 63
Query: 200 RSRLCYRKKTVKRVYGGVPAINVSSNAL 283
+L R++TV R YGGV + N +
Sbjct: 64 LKQLARRQRTVSRPYGGVLSAGALKNRI 91
>UniRef50_UPI000049A50B Cluster: 60S ribosomal protein L34; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L34 - Entamoeba histolytica HM-1:IMSS
Length = 137
Score = 70.9 bits (166), Expect = 1e-11
Identities = 37/79 (46%), Positives = 47/79 (59%)
Frame = +2
Query: 17 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 196
M R+T+ R+ SYNTKSN RIV+T GG + Q+ +K RCG C L GI+ RP
Sbjct: 1 MAVRVTYVRKHSYNTKSNGIRIVKTAGGNMTVQHRQKISNGVRCGDCGCVLAGIRHIRPH 60
Query: 197 ERSRLCYRKKTVKRVYGGV 253
+ L K+TV R YGGV
Sbjct: 61 QYGWLGKSKRTVTRAYGGV 79
Score = 37.5 bits (83), Expect = 0.13
Identities = 13/23 (56%), Positives = 20/23 (86%)
Frame = +1
Query: 256 CHKCVKQRIVRAFLIEEQKIVKV 324
CHKCV+++I+RAFLI E ++K+
Sbjct: 81 CHKCVQKKILRAFLINEHNLIKL 103
>UniRef50_Q8SSA2 Cluster: 60S ribosomal protein L34; n=1;
Encephalitozoon cuniculi|Rep: 60S ribosomal protein L34
- Encephalitozoon cuniculi
Length = 110
Score = 61.7 bits (143), Expect = 7e-09
Identities = 32/76 (42%), Positives = 44/76 (57%)
Frame = +2
Query: 20 VQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAE 199
++ + + +Y T+SN+RR VRTP G+LV + VKK K RC +C + L I RPAE
Sbjct: 1 MKNVLIHKGATYKTRSNRRRKVRTPSGKLVNRRVKKHSKKHRCHECNAILGSIARMRPAE 60
Query: 200 RSRLCYRKKTVKRVYG 247
SR + V R YG
Sbjct: 61 FSRQKVSARRVNRPYG 76
>UniRef50_A2DT99 Cluster: Ribosomal protein L34e, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein L34e,
putative - Trichomonas vaginalis G3
Length = 116
Score = 60.9 bits (141), Expect = 1e-08
Identities = 29/76 (38%), Positives = 43/76 (56%)
Frame = +2
Query: 26 RLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERS 205
R T RR L ++T N+ VRTPG +LV Y+ K + P C + ++ GI+ + E
Sbjct: 5 RYTLRRSLGFHTIRNRVAPVRTPGNKLVAHYIAKRQNGPHCAETGKRINGIKCVKTCELR 64
Query: 206 RLCYRKKTVKRVYGGV 253
R+ ++TV R YGGV
Sbjct: 65 RMKKNQRTVSRPYGGV 80
>UniRef50_O14396 Cluster: Putative uncharacterized protein; n=1;
Schizosaccharomyces pombe|Rep: Putative uncharacterized
protein - Schizosaccharomyces pombe (Fission yeast)
Length = 97
Score = 54.4 bits (125), Expect = 1e-06
Identities = 25/62 (40%), Positives = 36/62 (58%)
Frame = +2
Query: 80 IVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVPA 259
+++TPG + Y ++KK IPRCG L+GI +RL + KKTV+R YGG +
Sbjct: 26 VIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALVLVSLTRLSHNKKTVQRAYGGCLS 85
Query: 260 IN 265
N
Sbjct: 86 AN 87
>UniRef50_Q9UZJ7 Cluster: 50S ribosomal protein L34e; n=8;
Archaea|Rep: 50S ribosomal protein L34e - Pyrococcus
abyssi
Length = 91
Score = 54.4 bits (125), Expect = 1e-06
Identities = 26/64 (40%), Positives = 36/64 (56%)
Frame = +2
Query: 53 YNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTV 232
Y ++S +R+ VRTPGGR+V + ++ KI C C L GI RP E +L KK
Sbjct: 5 YRSRSWRRKYVRTPGGRVVIHFERRKPKIAHCAICGRPLNGIPRGRPVEMRKLPKTKKRP 64
Query: 233 KRVY 244
+R Y
Sbjct: 65 ERPY 68
>UniRef50_Q8TZB2 Cluster: 50S ribosomal protein L34e; n=3;
Archaea|Rep: 50S ribosomal protein L34e - Methanopyrus
kandleri
Length = 113
Score = 52.8 bits (121), Expect = 3e-06
Identities = 26/67 (38%), Positives = 34/67 (50%)
Frame = +2
Query: 53 YNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTV 232
Y ++S +R RTPGGR V + KK P+CG C +L G+ R E +K
Sbjct: 6 YRSRSCRRVYKRTPGGRTVIHFEKKIPNWPKCGACGRRLNGVMRGRNVELKNAPKTQKRP 65
Query: 233 KRVYGGV 253
R YGGV
Sbjct: 66 NRPYGGV 72
>UniRef50_Q17JY6 Cluster: Ribosomal protein L34, putative; n=1;
Aedes aegypti|Rep: Ribosomal protein L34, putative -
Aedes aegypti (Yellowfever mosquito)
Length = 123
Score = 50.0 bits (114), Expect = 2e-05
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Frame = +2
Query: 44 RLSYNTKSNQRRIVRTPGG-RLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYR 220
++SYNT N+RR+VRT G RLVY ++KK + + +C QCK + Q + +C
Sbjct: 9 KMSYNT--NKRRVVRTLGSDRLVYLFIKKQRIVSKCCQCKGEAVRNQ---ASVHVCMCRC 63
Query: 221 KKTVKRVYGGV 253
KTV R +GGV
Sbjct: 64 LKTVIRTFGGV 74
Score = 37.1 bits (82), Expect = 0.17
Identities = 15/21 (71%), Positives = 20/21 (95%)
Frame = +1
Query: 265 CVKQRIVRAFLIEEQKIVKVL 327
C ++RI+RAFLI+EQK+VKVL
Sbjct: 76 CHRERIIRAFLIDEQKVVKVL 96
>UniRef50_O26137 Cluster: 50S ribosomal protein L34e; n=3;
Methanobacteriaceae|Rep: 50S ribosomal protein L34e -
Methanobacterium thermoautotrophicum
Length = 88
Score = 50.0 bits (114), Expect = 2e-05
Identities = 26/68 (38%), Positives = 33/68 (48%)
Frame = +2
Query: 47 LSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKK 226
L Y ++S +R +TPGGR V Y +K C C L G+ RP E +L KK
Sbjct: 4 LRYRSRSYKRIFKKTPGGRTVTHYRRKKPSKHVCAGCGKPLHGVPRGRPYEIRKLSKSKK 63
Query: 227 TVKRVYGG 250
R YGG
Sbjct: 64 RPNRPYGG 71
>UniRef50_Q4Q141 Cluster: 60S ribosomal protein L34, putative; n=10;
Trypanosomatidae|Rep: 60S ribosomal protein L34,
putative - Leishmania major
Length = 168
Score = 45.6 bits (103), Expect = 5e-04
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = +2
Query: 26 RLTFRRRLSYNTKSNQRRIVRTPGGRLVYQ-YVKKPKKIPRCGQCKSK-LRGIQPARPAE 199
R+ +RRR+ Y T+ N+ ++VRTPG +LV Q K+ + I K L G + R +
Sbjct: 5 RVQYRRRMHYATRGNRMKMVRTPGNKLVMQKRAKRSQGIHTPWVLGHKRLGGTKALRHID 64
Query: 200 RSRLCYRKKTVKRVYGGV 253
+K+V R YGGV
Sbjct: 65 ARLASRHEKSVSRAYGGV 82
Score = 33.9 bits (74), Expect = 1.6
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +1
Query: 259 HKCVKQRIVRAFLIEEQKIVK 321
H V+ R+VRAFL+EEQ+IVK
Sbjct: 85 HDQVRDRVVRAFLVEEQRIVK 105
>UniRef50_P58026 Cluster: 50S ribosomal protein L34e; n=4;
Thermoprotei|Rep: 50S ribosomal protein L34e - Aeropyrum
pernix
Length = 95
Score = 45.6 bits (103), Expect = 5e-04
Identities = 25/70 (35%), Positives = 33/70 (47%)
Frame = +2
Query: 44 RLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRK 223
R ++S +R RTPGG V Y ++ RC +C L G+ RP RL
Sbjct: 8 RPGLRSRSLRRVYRRTPGGSTVVHYERRKPGPARCARCGRPLGGVPRGRPPRVRRLSKTA 67
Query: 224 KTVKRVYGGV 253
K +R YGGV
Sbjct: 68 KRPERPYGGV 77
>UniRef50_A1RXV1 Cluster: Ribosomal protein L34e; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein L34e - Thermofilum
pendens (strain Hrk 5)
Length = 91
Score = 44.8 bits (101), Expect = 8e-04
Identities = 24/69 (34%), Positives = 36/69 (52%)
Frame = +2
Query: 44 RLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRK 223
R + ++S +R++VRTPGGRL + K P+C C ++G+ P + R R
Sbjct: 3 RPALRSRSKKRKLVRTPGGRLALHVIDKKHDYPKCAICGRPIQGV-PKLTSRLERRGVRM 61
Query: 224 KTVKRVYGG 250
T R YGG
Sbjct: 62 PT--RPYGG 68
>UniRef50_Q8ZTJ2 Cluster: 50S ribosomal protein L34e; n=3;
Pyrobaculum|Rep: 50S ribosomal protein L34e -
Pyrobaculum aerophilum
Length = 84
Score = 41.1 bits (92), Expect = 0.010
Identities = 26/80 (32%), Positives = 41/80 (51%)
Frame = +2
Query: 44 RLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRK 223
R +Y ++S +R V+TPGGR V Y K+ K +P+C + G+ + R +
Sbjct: 3 RPAYRSRSVRRIKVKTPGGRTVIHYEKRAKGVPKCPITGLPIGGMN----KKVYRFGIKI 58
Query: 224 KTVKRVYGGVPAINVSSNAL 283
+ R YGGV + V + AL
Sbjct: 59 RAPSRPYGGVYSHKVLARAL 78
>UniRef50_Q6LZK0 Cluster: Ribosomal protein L34e; n=5;
Methanococcus|Rep: Ribosomal protein L34e -
Methanococcus maripaludis
Length = 89
Score = 39.1 bits (87), Expect = 0.041
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +2
Query: 53 YNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTV 232
Y + S+++ + PG + Y +K + CG C + L G+ R E ++L +K
Sbjct: 6 YKSGSSKKVYRKAPGNSSIVHYRRKKQSKAVCGACGALLNGVPRGRAVEITKLAKTEKRP 65
Query: 233 KRVYGG 250
+R +GG
Sbjct: 66 ERPFGG 71
>UniRef50_Q3LW25 Cluster: Ribosomal protein L34; n=1; Bigelowiella
natans|Rep: Ribosomal protein L34 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 90
Score = 35.5 bits (78), Expect = 0.51
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +2
Query: 26 RLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRC 148
R+T ++R +Y T SN+ I + GG+ V +Y+KK + +C
Sbjct: 2 RITLKKRKTYKTNSNKFIIKKILGGKYVAKYIKKLRTSNKC 42
>UniRef50_Q9YG49 Cluster: Putative uncharacterized protein; n=1;
Aeropyrum pernix|Rep: Putative uncharacterized protein -
Aeropyrum pernix
Length = 171
Score = 32.7 bits (71), Expect = 3.6
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Frame = -2
Query: 368 VAFFADLVLACCALRTFTIFCSSMRKALTMRCLTHLWQGHHHKHVSLFSYGSKD----GN 201
+A A L L A+ + I+ S T++ +T + V+ YG+ G
Sbjct: 5 IAIAAVLALVFIAIGAYAIYTSEYSDVSTLQSVTRASRVTVQAGVAYLGYGTATVIYGGK 64
Query: 200 VQQV*LAGYHGVCSCTDHTLGSSWAFLHTDKPSGHPVSLLFFFD 69
+ G +G+ TD + GSS+AF + G+ V+ L+ D
Sbjct: 65 TYTLEARGAYGILMPTDGS-GSSYAFFVMEGEKGYKVAALYELD 107
>UniRef50_UPI0000EBF257 Cluster: PREDICTED: hypothetical protein;
n=2; Bos taurus|Rep: PREDICTED: hypothetical protein -
Bos taurus
Length = 278
Score = 32.3 bits (70), Expect = 4.7
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = +2
Query: 92 PGGRLVYQYVKKPKKIPRCGQCK------SKLRGIQPARPAERSRLCYRKKTVKRVYGGV 253
PG V + + K +P C +C + +GI R R + Y+ RVY GV
Sbjct: 208 PGYTRVQRVYQSAKSVPECRECTRAYQSAKQYQGIPEFRECTRVQRVYQGIPECRVYQGV 267
Query: 254 PAINVSSNALSE 289
P +N SSN +++
Sbjct: 268 PEMN-SSNKVTK 278
>UniRef50_A1IBG0 Cluster: Glycosyltransferases involved in cell wall
biogenesis-like; n=2; Candidatus Desulfococcus
oleovorans Hxd3|Rep: Glycosyltransferases involved in
cell wall biogenesis-like - Candidatus Desulfococcus
oleovorans Hxd3
Length = 720
Score = 32.3 bits (70), Expect = 4.7
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -2
Query: 215 SKDGNVQQV*LAGYHGVCSCTDHTLGSSWAFLHTDK-PSGHPVSLLFFFDLI 63
++ G + + G GV G+SW F + K PS HP+SL F+D +
Sbjct: 442 TRQGRLTALLCLGAIGVSQLVPALTGNSWFFYYLYKVPSSHPLSLENFYDFL 493
>UniRef50_Q4ZWB5 Cluster: Putative uncharacterized protein; n=1;
Pseudomonas syringae pv. syringae B728a|Rep: Putative
uncharacterized protein - Pseudomonas syringae pv.
syringae (strain B728a)
Length = 146
Score = 31.9 bits (69), Expect = 6.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 296 RKALTMRCLTHLWQGHHHKHVSLFSYGSKDG 204
R+ + L LWQ HH V L+ +G+ DG
Sbjct: 85 RRGFALSALWQLWQKHHLPIVPLYQFGTSDG 115
>UniRef50_Q74NH0 Cluster: NEQ297; n=1; Nanoarchaeum equitans|Rep:
NEQ297 - Nanoarchaeum equitans
Length = 83
Score = 31.9 bits (69), Expect = 6.3
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 86 RTPGGRLVYQYVKKPKKIPRCGQCKSKLRGI--QPARPAERSRLCYRKKTVKRVYGG 250
RTPGGR+ Y ++ +C C L+G+ +PA +S RKK V R +GG
Sbjct: 9 RTPGGRVTVLYKRRKPSPAKCAICGRPLQGVVREPAYWL-KSEPKQRKK-VSRKFGG 63
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 387,338,642
Number of Sequences: 1657284
Number of extensions: 7628240
Number of successful extensions: 20443
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 19967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20435
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22340008747
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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