Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10873
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...    95   4e-21
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...    91   7e-20
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   0.97 
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    27   1.7  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    26   2.2  
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom...    26   2.2  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    24   9.0  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    24   9.0  

>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 95.1 bits (226), Expect = 4e-21
 Identities = 43/83 (51%), Positives = 58/83 (69%)
 Frame = +2

Query: 17  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 196
           M QR+T+RRRL+YNT+SN+ RI++TPG  + Y ++KK   IPRCG     L+GI   RP 
Sbjct: 1   MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 197 ERSRLCYRKKTVKRVYGGVPAIN 265
           E +RL + KKTV+R YGG  + N
Sbjct: 61  EFARLSHNKKTVQRAYGGCLSAN 83



 Score = 36.7 bits (81), Expect = 0.002
 Identities = 18/24 (75%), Positives = 18/24 (75%)
 Frame = +1

Query: 250 CPCHKCVKQRIVRAFLIEEQKIVK 321
           C     VK RIVRAFLIEEQKIVK
Sbjct: 79  CLSANAVKDRIVRAFLIEEQKIVK 102


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score = 91.1 bits (216), Expect = 7e-20
 Identities = 41/83 (49%), Positives = 57/83 (68%)
 Frame = +2

Query: 17  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 196
           M QR+T+RRRL+YNT+SN+ RI++TPG  + Y ++KK   IPRCG     L+GI   RP 
Sbjct: 1   MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 197 ERSRLCYRKKTVKRVYGGVPAIN 265
           E +RL + +K V+R YGG  + N
Sbjct: 61  EFARLSHNQKKVQRAYGGCLSAN 83



 Score = 36.7 bits (81), Expect = 0.002
 Identities = 18/24 (75%), Positives = 18/24 (75%)
 Frame = +1

Query: 250 CPCHKCVKQRIVRAFLIEEQKIVK 321
           C     VK RIVRAFLIEEQKIVK
Sbjct: 79  CLSANAVKDRIVRAFLIEEQKIVK 102


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 0.97
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +2

Query: 110 YQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVPA 259
           Y    +P +  + GQ     + +QP +P + ++       V+ V  GVPA
Sbjct: 368 YNQQSQPVQSYQSGQSTQHFQPVQPIQPVQSTQYYQPSSPVQPVQNGVPA 417


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 38  RRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR 145
           RR  + N KS+++R    PG  L  +   KPK   R
Sbjct: 244 RREQNRNQKSSKQRPFHKPGNSLASRLGSKPKSFKR 279


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 389 LSPKIHFVAFFADLVLACCALRTFTIFCSS 300
           L   IH  A   +  L+CC   T  I+CSS
Sbjct: 9   LCKAIHLKAIIEEPKLSCCHCETCRIWCSS 38


>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 38  RRRLSYNTKSN-QRRIVRTPGGRLVY 112
           R+  SY T +   +RIV+ PGGR +Y
Sbjct: 161 RQHESYATSARGSKRIVQVPGGRRIY 186


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 275 CLTHLWQGHHHKHVSLFSYGSKDGN 201
           C   LW   H++H  +FS+  ++ N
Sbjct: 240 CRKILWPSLHYQHNEIFSFFHEESN 264


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 143 RCGQCKSKLRGIQPARPAERSR 208
           RC +CK   +G    RP  R R
Sbjct: 341 RCSRCKKSKKGCDRQRPCGRCR 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,588,491
Number of Sequences: 5004
Number of extensions: 31634
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)