Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10873
         (441 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)          40   0.001
SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06)                 30   0.74 
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)                      29   2.2  
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)               28   3.0  
SB_22814| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  

>SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)
          Length = 58

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 17/21 (80%), Positives = 19/21 (90%)
 Frame = +1

Query: 256 CHKCVKQRIVRAFLIEEQKIV 318
           C  CVK+RI+RAFLIEEQKIV
Sbjct: 25  CAACVKERIIRAFLIEEQKIV 45


>SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06)
          Length = 299

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 34  IQATTVVQHKIKSKKNSKDTGWPLGLSV 117
           I     VQH  K+KK + DT +P+G++V
Sbjct: 45  ISGEYAVQHSCKNKKETIDTDYPIGMAV 72


>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 41  RRLSYNTKSNQRRIVRTPGGRLVYQYVKKP 130
           RR++  T SN  R++RTP G+ ++  VK P
Sbjct: 159 RRITKTTNSNSTRLIRTP-GQSIHIKVKAP 187


>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
          Length = 690

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +1

Query: 10  LENGAAAYIQATTVVQHKIKSKKNSKDTGWPLGLSVCKKAQEDPKVWSVQEQTPW 174
           ++  ++AYI  T+  + K+K+K     T  P    V K A E+ K  + +++ P+
Sbjct: 496 VKRASSAYIHFTSDFRAKLKAKSAKSGTPLPKANEVAKLAGEEWKKLNDEQKKPY 550


>SB_22814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 42

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 122 LHTDKPSGHPVSLLFFFDLI 63
           LHT +P+GHP  ++  FD I
Sbjct: 5   LHTTEPTGHPCHIVCCFDAI 24


>SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 264 MCQATHCQSLPH*RTKNCEGPQGTTGEH*VGKEGYKVNFR 383
           +CQ  HC  LP  R K+C+ P   TG     ++ Y+   R
Sbjct: 115 VCQDDHCACLPCWRGKSCDQPD-LTGPPEFEQKEYEAEIR 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,143,491
Number of Sequences: 59808
Number of extensions: 251295
Number of successful extensions: 756
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)