Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10869
(391 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 73 2e-14
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 72 3e-14
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 52 3e-08
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 29 0.34
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 26 1.8
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 25 5.5
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 24 7.2
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 24 7.2
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 24 7.2
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 24 9.5
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 24 9.5
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 24 9.5
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 24 9.5
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 72.9 bits (171), Expect = 2e-14
Identities = 32/59 (54%), Positives = 42/59 (71%)
Frame = +2
Query: 2 EDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 178
+D LK+K+ SDK+ I +TI+WLD N A K+EYE KQKELEG+ NPI+ K+YQ
Sbjct: 552 DDPNLKDKVDASDKEAIDKAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAKIYQ 610
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 72.1 bits (169), Expect = 3e-14
Identities = 31/59 (52%), Positives = 43/59 (72%)
Frame = +2
Query: 2 EDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQ 178
+D LK+K+ SDK+T+ +TI+WLDSN A K+E+E KQKELE + NPI+ K+YQ
Sbjct: 552 DDPNLKDKVDASDKETVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANPIMAKIYQ 610
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 52.0 bits (119), Expect = 3e-08
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = +2
Query: 2 EDEKLKEKISDSDKQTILDKCNDTIKWLD-SNQLADKEEYEHKQKELEGIYNPIITKMY 175
+DE+L K+ DKQ +LD D +WL+ + A KEE+E ++++L+ + +PI K+Y
Sbjct: 583 DDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKLY 641
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 28.7 bits (61), Expect = 0.34
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 17 KEKISDSDKQTILD-KCNDTIKWLDSNQLADKEEYEHKQKELE 142
+EKI +++TI D K + + ++ EEY KQKEL+
Sbjct: 427 EEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQ 469
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 1.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 186 EESPEVCRASRAEHPEPE 239
EE+P AS EHPEP+
Sbjct: 244 EEAPAAAAASENEHPEPK 261
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 24.6 bits (51), Expect = 5.5
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +2
Query: 65 NDTIKWLDSNQLADKEEYEHKQKELEGIYNP 157
N+ +K D + ++ ++E E + +GIY P
Sbjct: 141 NNVVKEDDKSSISSEDEEEELRSAKDGIYRP 171
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 24.2 bits (50), Expect = 7.2
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 2 EDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELE 142
E EK KEK D D++ DT+ D NQ+ +E E QKE++
Sbjct: 271 EKEKAKEKQKDKDQE------QDTVS--DKNQI---DEIEKGQKEVD 306
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 24.2 bits (50), Expect = 7.2
Identities = 7/28 (25%), Positives = 17/28 (60%)
Frame = +2
Query: 2 EDEKLKEKISDSDKQTILDKCNDTIKWL 85
++++++ K+S D L+ CN+ + L
Sbjct: 261 KEQEIRRKVSSDDVHNYLESCNNHLSML 288
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 24.2 bits (50), Expect = 7.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 26 ISDSDKQTILDKCNDTIKWLDSNQLADK 109
I +K T+ D+ NDT +WLD +L DK
Sbjct: 215 IGKDEKYTLYDQ-NDTKEWLD--KLGDK 239
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 23.8 bits (49), Expect = 9.5
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +2
Query: 5 DEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKE 136
+++L+E + D ++L K ++W + K++ E +KE
Sbjct: 208 EQELRENVRDP--YSLLSKIQPRVRWQSHMESQKKKQKEEAEKE 249
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 23.8 bits (49), Expect = 9.5
Identities = 9/44 (20%), Positives = 24/44 (54%)
Frame = +2
Query: 20 EKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGIY 151
E+ SDSD++ D +++ + + ++ + ++ E +G+Y
Sbjct: 1823 EESSDSDREEPPDLYRNSVLGIFQGDIVNENDENYEDSEDDGVY 1866
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 23.8 bits (49), Expect = 9.5
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +2
Query: 137 LEGIYNPIITKMY 175
L+G+Y+ IITK+Y
Sbjct: 282 LDGVYDTIITKLY 294
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 23.8 bits (49), Expect = 9.5
Identities = 12/53 (22%), Positives = 23/53 (43%)
Frame = +2
Query: 2 EDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGIYNPI 160
E+ +K + + D L+ + + L N YEH QK + ++N +
Sbjct: 618 ENSNVKTQSVEPDNGLSLEALKNENQTLLKNLEDSTARYEHLQKSFKNVFNQL 670
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,337,045
Number of Sequences: 5004
Number of extensions: 23082
Number of successful extensions: 109
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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