Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10864
(772 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000DB73CE Cluster: PREDICTED: similar to Artemis pr... 74 5e-12
UniRef50_UPI0000D570CA Cluster: PREDICTED: similar to Artemis pr... 69 1e-10
UniRef50_Q96SD1 Cluster: Artemis protein; n=42; Deuterostomia|Re... 53 9e-06
UniRef50_Q4S5A2 Cluster: Chromosome 19 SCAF14731, whole genome s... 49 1e-04
UniRef50_A7RK35 Cluster: Predicted protein; n=1; Nematostella ve... 48 3e-04
UniRef50_Q7QFP1 Cluster: ENSANGP00000019205; n=1; Anopheles gamb... 44 0.004
UniRef50_Q5QJC4 Cluster: DNA cross-link repair 1A protein; n=2; ... 42 0.022
UniRef50_A6H8J3 Cluster: LOC733261 protein; n=2; Xenopus laevis|... 40 0.052
UniRef50_UPI00001CEC53 Cluster: PREDICTED: similar to DNA cross-... 38 0.28
UniRef50_Q1DXM7 Cluster: Putative uncharacterized protein; n=1; ... 38 0.28
UniRef50_A3ATH2 Cluster: Putative uncharacterized protein; n=2; ... 37 0.48
UniRef50_Q6ZD68 Cluster: DNA ligase-like; n=3; Oryza sativa|Rep:... 37 0.64
UniRef50_UPI0000EE018A Cluster: PREDICTED: similar to DNA cross-... 36 1.1
UniRef50_Q7YN59 Cluster: RNA polymerase C2; n=1; Eimeria tenella... 36 1.1
UniRef50_Q4WJW5 Cluster: DNA repair protein, putative; n=3; Tric... 36 1.5
UniRef50_Q38961 Cluster: DNA cross-link repair protein SNM1; n=5... 35 2.6
UniRef50_A5DY79 Cluster: Putative uncharacterized protein; n=1; ... 34 4.5
UniRef50_A2ZWM4 Cluster: DNA ligase; n=2; Oryza sativa|Rep: DNA ... 33 7.9
>UniRef50_UPI0000DB73CE Cluster: PREDICTED: similar to Artemis
protein (DNA cross-link repair 1C protein) (SNM1-like
protein) (A-SCID protein) (hSNM1C); n=1; Apis
mellifera|Rep: PREDICTED: similar to Artemis protein
(DNA cross-link repair 1C protein) (SNM1-like protein)
(A-SCID protein) (hSNM1C) - Apis mellifera
Length = 392
Score = 73.7 bits (173), Expect = 5e-12
Identities = 33/78 (42%), Positives = 47/78 (60%)
Frame = +3
Query: 12 MPIKINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEF 191
+P IYLDTTF + F +FP R++S+ + IK W+ +P N + L SA YG EF
Sbjct: 154 IPKSFTKIYLDTTFLSTDFSSFPTRQESVFKMYEVIKNWISKDPRNVVILECSAMYGSEF 213
Query: 192 VFNEIYNILNMKTYVSDD 245
+F E+ +LNMK +V D
Sbjct: 214 LFVELSKMLNMKIHVRSD 231
>UniRef50_UPI0000D570CA Cluster: PREDICTED: similar to Artemis
protein (DNA cross-link repair 1C protein); n=1;
Tribolium castaneum|Rep: PREDICTED: similar to Artemis
protein (DNA cross-link repair 1C protein) - Tribolium
castaneum
Length = 383
Score = 69.3 bits (162), Expect = 1e-10
Identities = 31/79 (39%), Positives = 48/79 (60%)
Frame = +3
Query: 9 NMPIKINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYE 188
N +I +YLDTTF +S+ FP R +S+ + + I W+ + I L TSA+YGYE
Sbjct: 145 NAKKRIEAVYLDTTFFLKSYAKFPPRAESLEEICSIISDWISRSDKHVIGLDTSAKYGYE 204
Query: 189 FVFNEIYNILNMKTYVSDD 245
++F EIY + M +V+D+
Sbjct: 205 YLFIEIYKQIKMPIHVNDE 223
Score = 35.5 bits (78), Expect = 1.5
Identities = 25/84 (29%), Positives = 38/84 (45%)
Frame = +2
Query: 257 YSKLPSVKGITNHSEDTMIHLCEKRKWREFDHSKCLPEHRANQKYLNVIFSAMRHRSMDN 436
YS++P + S+DT IH +R + C N K + V SA R +S
Sbjct: 228 YSRVPEMDRAVTRSKDTRIHSACGTTYR----TVCPNTVHYNVKVVKV--SAFRWKSESL 281
Query: 437 ENSPLDSRDGVIYVCFATHCSREE 508
+N + +VC++TH S EE
Sbjct: 282 QNGISEKTHNTHFVCYSTHASFEE 305
>UniRef50_Q96SD1 Cluster: Artemis protein; n=42; Deuterostomia|Rep:
Artemis protein - Homo sapiens (Human)
Length = 692
Score = 52.8 bits (121), Expect = 9e-06
Identities = 21/72 (29%), Positives = 42/72 (58%)
Frame = +3
Query: 24 INTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNE 203
I ++YLDTTF + F P R++ + ++ ++ W+ P + + L+ A YGYE++F
Sbjct: 159 IQSVYLDTTFCDPRFYQIPSREECLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFTN 218
Query: 204 IYNILNMKTYVS 239
+ L ++ +V+
Sbjct: 219 LSEELGVQVHVN 230
>UniRef50_Q4S5A2 Cluster: Chromosome 19 SCAF14731, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 19
SCAF14731, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 513
Score = 49.2 bits (112), Expect = 1e-04
Identities = 22/75 (29%), Positives = 40/75 (53%)
Frame = +3
Query: 24 INTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNE 203
I +IYLD+TF + F P R ++ ++ + +W+ P + L+ A YGYE++F
Sbjct: 163 IQSIYLDSTFYDPKFFRIPTRDACLKGIMELVGKWISQSPHHVAWLNCKAAYGYEYLFTH 222
Query: 204 IYNILNMKTYVSDDK 248
+ N + +V+ K
Sbjct: 223 LGEEFNTQIHVNSLK 237
>UniRef50_A7RK35 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 305
Score = 47.6 bits (108), Expect = 3e-04
Identities = 21/75 (28%), Positives = 40/75 (53%)
Frame = +3
Query: 24 INTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNE 203
I ++Y+DTTF + P RK++ + I +W + ++L ++YGYE++
Sbjct: 158 IRSVYIDTTFCLPKMMSIPSRKETNDAIFKVIDRWFSQGAEHVVSLQCKSKYGYEYMLKS 217
Query: 204 IYNILNMKTYVSDDK 248
I +K +VSD++
Sbjct: 218 IAIYYKIKIHVSDER 232
>UniRef50_Q7QFP1 Cluster: ENSANGP00000019205; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000019205 - Anopheles gambiae
str. PEST
Length = 406
Score = 44.0 bits (99), Expect = 0.004
Identities = 21/73 (28%), Positives = 41/73 (56%)
Frame = +3
Query: 18 IKINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVF 197
++ +YLD+TF + + FP R+ S+ +V +W+ + N +AL A YG E +F
Sbjct: 141 VRPTIVYLDSTFLDRRYAYFPPRQASMDRIVELCSRWLAHDRRNVVALWPPASYGSEELF 200
Query: 198 NEIYNILNMKTYV 236
++ + L+ + +V
Sbjct: 201 CQLADRLHQRIHV 213
>UniRef50_Q5QJC4 Cluster: DNA cross-link repair 1A protein; n=2;
Gallus gallus|Rep: DNA cross-link repair 1A protein -
Gallus gallus (Chicken)
Length = 972
Score = 41.5 bits (93), Expect = 0.022
Identities = 26/77 (33%), Positives = 41/77 (53%)
Frame = +3
Query: 21 KINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFN 200
KI+T+YLDTT+ + + FP +++ I+ VN + V P + T + G E VF
Sbjct: 761 KIHTLYLDTTYCSPEY-TFPSQQEVIQFAVNTAFEMVTLNPRTLVVCGTYS-IGKEKVFL 818
Query: 201 EIYNILNMKTYVSDDKW 251
I +L K +S DK+
Sbjct: 819 AIAEVLGSKASMSRDKY 835
>UniRef50_A6H8J3 Cluster: LOC733261 protein; n=2; Xenopus
laevis|Rep: LOC733261 protein - Xenopus laevis (African
clawed frog)
Length = 932
Score = 40.3 bits (90), Expect = 0.052
Identities = 24/77 (31%), Positives = 43/77 (55%)
Frame = +3
Query: 21 KINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFN 200
+++T+YLDTT+ + + FP ++++I+ VN + V P + T + G E VF
Sbjct: 721 RVHTLYLDTTYCSPEY-TFPPQQETIQFAVNIAFETVTLYPRTLVVCGTYS-VGKEKVFL 778
Query: 201 EIYNILNMKTYVSDDKW 251
I ++L K +S DK+
Sbjct: 779 AIADVLGCKVCMSQDKY 795
>UniRef50_UPI00001CEC53 Cluster: PREDICTED: similar to DNA cross-link
repair 1A protein; n=3; Deuterostomia|Rep: PREDICTED:
similar to DNA cross-link repair 1A protein - Rattus
norvegicus
Length = 1026
Score = 37.9 bits (84), Expect = 0.28
Identities = 23/77 (29%), Positives = 42/77 (54%)
Frame = +3
Query: 21 KINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFN 200
K++T++LDTT+ + + FP ++++I+ +N + V P I T G E VF
Sbjct: 817 KVHTLFLDTTYCSPEY-TFPSQQEAIQFAINTAFEAVTLNPRALIVCGTYC-IGKEKVFL 874
Query: 201 EIYNILNMKTYVSDDKW 251
I ++L K +S +K+
Sbjct: 875 AIADVLGSKVGMSQEKY 891
>UniRef50_Q1DXM7 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 704
Score = 37.9 bits (84), Expect = 0.28
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Frame = +3
Query: 21 KINTIYLDTTF--QNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFV 194
+++ IYLDTTF +++ + FP + + I+ L++ +K + P + I + +GYE V
Sbjct: 97 RLDRIYLDTTFAIKSDIYSAFPSKAEGIKELLHKVKAY----PEDTIFYFRNWTFGYEDV 152
Query: 195 FNEIYNILNMKTYV 236
+ + LN K +V
Sbjct: 153 WIALSAALNTKIHV 166
>UniRef50_A3ATH2 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 508
Score = 37.1 bits (82), Expect = 0.48
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = +3
Query: 21 KINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFN 200
+IN +YLDTT+ N + FP ++D I V K+++ EP I + + G E V+
Sbjct: 283 QINLLYLDTTYCNPKY-KFPPKEDVIDFAVRTAKRYLQKEPKTLIVVGAYS-IGKENVYL 340
Query: 201 EIYNILNMKTY 233
I L + Y
Sbjct: 341 AISKALQVPIY 351
>UniRef50_Q6ZD68 Cluster: DNA ligase-like; n=3; Oryza sativa|Rep:
DNA ligase-like - Oryza sativa subsp. japonica (Rice)
Length = 663
Score = 36.7 bits (81), Expect = 0.64
Identities = 24/72 (33%), Positives = 34/72 (47%)
Frame = +3
Query: 33 IYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNEIYN 212
++LD TF S +FP + DSIR ++N I W P + S G E + E+
Sbjct: 134 VFLDCTFAACSL-HFPSKDDSIRQVINCI--W--KHPNAPVVYLVSDMLGQEEILMEVSK 188
Query: 213 ILNMKTYVSDDK 248
+ K YV DK
Sbjct: 189 VFGSKIYVDRDK 200
>UniRef50_UPI0000EE018A Cluster: PREDICTED: similar to DNA cross-link
repair 1A (PSO2 homolog, S. cerevisiae); n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: similar to DNA
cross-link repair 1A (PSO2 homolog, S. cerevisiae) -
Ornithorhynchus anatinus
Length = 994
Score = 35.9 bits (79), Expect = 1.1
Identities = 22/77 (28%), Positives = 41/77 (53%)
Frame = +3
Query: 21 KINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFN 200
KI+ +YLDTT+ + + +FP +++ I+ N + ++ P + T + G E VF
Sbjct: 785 KIHMLYLDTTYCSPEY-SFPSQQEVIQFAANTAFESINLNPHTLVICGTYS-IGKEKVFI 842
Query: 201 EIYNILNMKTYVSDDKW 251
I +L K +S +K+
Sbjct: 843 AIAEVLGSKVSMSQEKY 859
>UniRef50_Q7YN59 Cluster: RNA polymerase C2; n=1; Eimeria
tenella|Rep: RNA polymerase C2 - Eimeria tenella
Length = 1050
Score = 35.9 bits (79), Expect = 1.1
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
Frame = +3
Query: 3 KDNMPIKINTIYLDTTFQNES-----FDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHT 167
K N KINT + T + F + + +++ V + V GEP ++ L T
Sbjct: 269 KFNFLFKINTFSIKTCIAGRTICSICFGSTTFKHNNLGKNVGILSGQVIGEPGTQLTLRT 328
Query: 168 SARYG-YEFVFNEIYN----ILNMKTYVSDDKWACTANYHLLKGSRTTAKIR*YIYVRN 329
G + N+I N I N K + + +K+ YH +K + KI +IY++N
Sbjct: 329 FHTGGTFTLNLNKIKNKDNFIFNYKYFFNINKYKLCVKYHKIKRLKNNNKILYFIYLKN 387
>UniRef50_Q4WJW5 Cluster: DNA repair protein, putative; n=3;
Trichocomaceae|Rep: DNA repair protein, putative -
Aspergillus fumigatus (Sartorya fumigata)
Length = 760
Score = 35.5 bits (78), Expect = 1.5
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Frame = +3
Query: 21 KINTIYLDTTFQ--NESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFV 194
K++ IYLDTTF N +FP + + +R L+ Q V+ P I + +GYE V
Sbjct: 155 KLDKIYLDTTFASINHVCRSFPSKAEGLRELL----QKVEAYPKETIFYFRAWTFGYEDV 210
Query: 195 FNEIYNILNMKTYVS---DDKWACTANYHL 275
+ + LN K D +++ T H+
Sbjct: 211 WIALSAFLNTKVCDGTQIDKRFSLTLQVHI 240
>UniRef50_Q38961 Cluster: DNA cross-link repair protein SNM1; n=5;
Magnoliophyta|Rep: DNA cross-link repair protein SNM1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 484
Score = 34.7 bits (76), Expect = 2.6
Identities = 20/73 (27%), Positives = 38/73 (52%)
Frame = +3
Query: 21 KINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFN 200
+++ +YLDTT+ N + FP ++D + +V K ++ +P I + S G E V+
Sbjct: 277 RVHVLYLDTTYCNPRY-KFPSKEDVLSYVVRITKDFLRKQPKTLIVV-GSYSIGKECVYL 334
Query: 201 EIYNILNMKTYVS 239
I L +K + +
Sbjct: 335 AIAKALGVKIFAN 347
>UniRef50_A5DY79 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 645
Score = 33.9 bits (74), Expect = 4.5
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +3
Query: 24 INTIYLDTTF--QNESFDNFPRRKDSIRMLVNHIKQWVDGE 140
++TIYLDTTF + E + + P D I L+N +K + +G+
Sbjct: 149 LDTIYLDTTFAYRGEPYISIPPNSDGIANLINLLKLYPEGK 189
>UniRef50_A2ZWM4 Cluster: DNA ligase; n=2; Oryza sativa|Rep: DNA
ligase - Oryza sativa subsp. japonica (Rice)
Length = 1481
Score = 33.1 bits (72), Expect = 7.9
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +3
Query: 18 IKINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQ 125
I + ++LDTT+ N F FP +K+S+ +VN IK+
Sbjct: 184 IGADAVFLDTTYCNPKF-TFPPQKESLEYVVNSIKR 218
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 778,650,677
Number of Sequences: 1657284
Number of extensions: 16603092
Number of successful extensions: 40588
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 38931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40581
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64615845515
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -