Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10864
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.7  
SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...    27   3.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   3.9  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    27   3.9  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    26   6.9  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    26   6.9  

>SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
 Frame = +3

Query: 141 PTNRI-----ALHTSARYGYEFV-FNEIYNILNMKTYVSDDK 248
           PTN++     AL  S    ++ + F+++ NILN  TY  DDK
Sbjct: 43  PTNKVLSELAALFESCNLIFDLIWFDDLQNILNQVTYELDDK 84


>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 537 RCKITDEKIHSSRLQCVAKHTYITPSRLSKGEFSLSIER 421
           R  +  EK+  S +  + K  Y+ PS L+ G+F   I +
Sbjct: 28  RIPVICEKVDKSDIAAIDKKKYLVPSDLTVGQFVYVIRK 66


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 117 IKQWVDGEPTNRIALHTSARYG-YEFVFNEIYNILNMK 227
           I +WVDG+PTN     T   Y  YE  F    +I+ ++
Sbjct: 71  IDKWVDGDPTNNDFSGTRFEYDIYETEFRNGGDIIGVR 108


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 495 AAERNEFFRQLFYTGQGCRFQGSVYTESGHETMSRL*ANENG 620
           A +R E  R+L   G+G   +   Y E+G    S +  +ENG
Sbjct: 492 ALDRKEEERELRTRGEGATVETENYVENGKLVTSEMPQHENG 533


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
            Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +3

Query: 21   KINTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQ---WVDGE 140
            +IN   L     N  FD   R K      +NH+++   W+DG+
Sbjct: 903  EINNGELTIQKLNHEFDRLEREKSVAITAINHLEKENDWIDGQ 945


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/71 (23%), Positives = 32/71 (45%)
 Frame = +3

Query: 24  INTIYLDTTFQNESFDNFPRRKDSIRMLVNHIKQWVDGEPTNRIALHTSARYGYEFVFNE 203
           I+ +YLDTT+ N  +  FP + D ++   +          +  + + ++   G E V   
Sbjct: 320 IHKVYLDTTYLNPKY-TFPPQADVVQACADKAISIKKSTDSRLLVVVSTYSIGKEKVAVA 378

Query: 204 IYNILNMKTYV 236
           I   L+ + YV
Sbjct: 379 IAKSLSSRIYV 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,409,674
Number of Sequences: 5004
Number of extensions: 77513
Number of successful extensions: 186
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)